Streptomyces xiamenensis: SXIM_29510
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Entry
SXIM_29510 CDS
T03904
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sxi
Streptomyces xiamenensis
Brite
KEGG Orthology (KO) [BR:
sxi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxi03019
]
SXIM_29510
Enzymes [BR:
sxi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SXIM_29510
Messenger RNA biogenesis [BR:
sxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SXIM_29510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_19
DEAD
AAA_22
WHD_HA2
nSTAND3
T2SSE
nSTAND_NTPase5
AAA_25
NACHT
PhoH
Zeta_toxin
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AKG44335
UniProt:
A0A0F7FVN8
LinkDB
All DBs
Position
complement(3186102..3189995)
Genome browser
AA seq
1297 aa
AA seq
DB search
MLHDERRLGRRLDGARRIRKPEARQSVLAEIAEAMDRAELRVEARRAALPSIVYPQQLPV
SQKKDEIRDAIRDHQVVIVAGETGSGKTTQIPKICLELGRGVRGLIGHTQPRRIAARTVA
QRVADELGTPLGETVGWKVRFTDQVGDSTLVKLMTDGILLAEVQHDRELLKYDTIIIDEA
HERSLNIDFLLGYLAQLLPRRPDLKIIITSATIDPERFARHFGPGEGRAAPIIEVSGRTF
PVEVRYREPEEDDDQVSAICAAVDELQGEGPGDILVFLSGEREIRDTADALEKRRLRFTE
ILPLYARLSHSEQQRVFQQHSGRRVVLATNVAETSLTVPGIKYVIDPGTARISRYSHRTK
VQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEEDFLSRPEFTDAEILRTNLASVILQ
MNAAGLGEVEKFPFIDPPDHRSVKAGVQLLEELGALHGAKLTDTGRKLSQLPVDPRLARM
VLEAGRNGCAREVMVIAAALSIQDPRERPADKQQAADEKHRRFREGPGEESDFLALVALW
DYVRERQRELSSSAFRRMCRTEFLNYLRIREWQDIYAQLRSVGKTMGVTPGDQAASPTVV
HQSLLAGLLSHLGLKDTDKNEYLGARSAKFAVFPGSALFKKPPRWVMSAELVETSRLWAR
VNAKIEPEWIEPLAQHLVKRTYSEPHWEQKQAAVMAYERVTLYGIPVVAQRKVNYGRIDP
ETCRDLFIRNALVEGDWRTQHQFFRENRALLAEVEELEHRARRRDILVDDETLYDFYDQR
LPEEIVSGAHFDSWWKKKRHDEPDLLNFEKSMLINERAEGVTKADYPDTWRQGRLSFRVT
YQFEPGTDADGVTVHVPLQVLNQATPDGFDWQIPGLREQLVTELIRSLPKPIRRHCVPAP
NYAARFLAGLSGPTSRPLRVELAAALQRMTGVRVSAEDFSPQAVPAHLRITFRVVDERRR
TLGEDKDLEALRLALKPKTREAISRAFKASGQAAGGETSQVALEQRGGITSWTVGTLLRR
FETRRAGQPVQAYPALVDEGSSVAVRLFDTEEEQLAAMWPGVRRLVMLQLPSDPAKFAVG
KLDNAAKLALAASPHGSVQALLADCVTAAADRLIADRGGVVWDQESFTKLFDAVRADIVD
LTLKIVRQVRQVLIAWQACERRLKATTSPVLASSVADVRQQLGELLRPGFVTAHGAGRLA
DLLRYLTAVDRRLQQLPHQAERDRARMAKVAEMRDEYAWLLEQFPAGRPVPRQAREIRWM
IEELRVSYFAHALGTAYPISDKRIVKAIDALVPGPAR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacgacgagcggcggctcggccggcggctcgacggtgcccgccggatccgtaag
cccgaggcgcggcagtccgtgctggccgagatcgccgaggcgatggaccgtgccgagctg
cgcgtcgaggcgcgccgggccgcgctgccgtcgatcgtctatccccagcagctgcccgtc
agccagaagaaggacgagatccgcgacgcgatccgcgaccaccaggtggtgatcgtggcc
ggtgagaccgggtccgggaagaccacccagatcccgaagatctgcctggagctggggcgc
ggggtgcgcgggctgatcggccacacccagccgcgccggatcgcggcccgtaccgtcgcg
cagcgggtcgccgacgagctggggacgccgctgggggagacggtgggctggaaggtcagg
ttcaccgaccaggtcggggactcgaccctggtgaagctcatgacggacggcatcctgctg
gccgaggtgcagcacgaccgcgagctgctgaagtacgacacgatcatcatcgacgaggcc
cacgagcggagcctcaacatcgatttcctgctcggctacctcgcccagctgctgccccgg
cggcccgatctgaagatcatcatcacctcggccaccatcgaccccgagcgcttcgcccgg
cacttcggccccggggaggggcgggcggcgccgatcatcgaggtgtccgggcggacgttc
ccggtcgaggtccggtaccgggagcccgaggaggacgacgaccaggtctccgcgatctgc
gccgccgtcgacgagctccagggggaggggcccggcgacatcctcgtcttcctctccggg
gagcgcgagatccgggacaccgccgacgccctcgagaagcgccggctgcggttcaccgag
atcctgccgctgtacgcgcggctctcgcacagcgagcagcagcgggtcttccagcagcac
agcgggcggcgggtggtgctcgccaccaacgtggccgagacctcgctcaccgtgcccggc
atcaagtacgtgatcgacccggggacggcccgcatctcccggtacagccaccgcaccaag
gtgcagcggctgccgatcgagccggtgtcgcaggccagcgccaaccagcgcaagggccgc
tgcgggcggaccagcgacggcatctgcatccggctgtactcggaggaggacttcctctcc
cggcccgagttcaccgatgccgagatcctgcggaccaatctcgcctccgtgatcctccag
atgaacgcggccggcctgggcgaggtcgagaagttccccttcatcgaccccccggaccac
cgcagcgtcaaggcgggcgtgcagctgctggaggagctgggcgcgctgcacggcgccaag
ctcaccgacaccgggcgcaagctctcccagctgccggtcgacccccggctggcccggatg
gtgctggaggccggccgcaacggctgcgcccgcgaggtgatggtgatcgccgccgcgctg
tccatccaggacccgcgcgagcgccccgccgacaagcagcaggcggccgacgagaagcac
cggcggttccgcgaggggcccggcgaggagtccgacttcctcgccctggtcgcgctgtgg
gactacgtgcgcgagcggcagcgcgagctgtcctcctccgccttccgccggatgtgccgc
accgagttcctgaactacctgcgcatacgggagtggcaggacatctacgcccagctgcgc
tcggtcgggaagaccatgggggtcacccccggcgaccaggccgcctcccccaccgtcgtc
catcagtcgctgctggccgggctgctctcccacctcgggctcaaggacaccgacaagaac
gagtacctgggcgcccgcagcgcgaagttcgcggtcttccccggctcggcgctgttcaag
aagccgccgcgctgggtcatgtcggccgagctggtggagacctcccggctgtgggcccgg
gtcaacgcgaagatcgagccggagtggatcgagccgctcgcccagcacctggtcaaacgc
acgtacagcgagccgcactgggagcagaagcaggcggcggtgatggcgtacgagcgggtc
acgctgtacgggatccccgtcgtcgcccagcggaaggtcaactacggccggatcgacccg
gagacctgccgggacctgttcatccgcaacgccctggtggagggcgactggcgcacccag
caccagttcttccgggagaaccgcgcgcttctcgccgaggtcgaggagctggaacaccgc
gccaggcgccgcgacatcctggtggacgacgagacgctgtacgacttctacgatcagcgg
cttccggaagagatcgtctccggggcgcacttcgactcctggtggaagaagaagcgccac
gacgagccggatctgctcaacttcgagaagtccatgctcatcaacgagcgggccgagggc
gtcaccaaggcggactacccggacacctggcggcagggccggctgtccttccgggtgacg
taccagttcgagccgggcacggacgcggacggcgtcaccgtgcacgtcccgctccaggtc
ctcaaccaggccaccccggacggcttcgactggcagatccctgggctgcgcgagcagttg
gtgaccgagctgatccgctcgctgccgaaaccgatccggcggcactgcgtaccggcgccg
aactacgccgcccgcttcctggccgggctctccgggccgacctcccggccgctgcgcgtg
gagctggcggcggcgctccagcggatgaccggggtacgggtgtcggccgaggacttctcg
ccgcaggcggtaccggcccatctgcgcatcaccttccgggtggtggacgagcggcgccgg
acgctcggcgaggacaaggacctggaggcgctgcggctggcgctcaagcccaagacgcgg
gaggccatctcgcgggcgttcaaggcttccgggcaggccgccggcggggagacctcccag
gtggccctggagcagcgcggcggcatcacctcctggacggtggggacgctgctgcgccgg
ttcgagacccggcgggccgggcagccggtgcaggcctatccggcgctggtggacgagggg
tcgagcgtcgcggtgcgactgttcgacaccgaggaggagcagctcgccgcgatgtggccg
ggggtgcggcggctggtgatgctccagctgccctccgacccggcgaagttcgcggtgggc
aagctggacaacgcggcgaagctggcgctggccgcctccccgcacggcagcgtgcaggcg
ctgctcgcggactgcgtgacggcggcggcggaccggctgatcgccgaccggggcggggtg
gtgtgggaccaggagagcttcaccaagctcttcgacgcggtacgcgccgacatcgtcgat
ctgacgctcaagatcgtgcggcaggtgcggcaggtgctgatcgcctggcaggcgtgcgag
cggcggctgaaggccaccaccagccccgtcctggcctcctcggtggccgatgtccggcag
cagctgggcgagttgctgcgtccgggcttcgtcacggcgcacggggccggccggctcgcc
gatctgctgcgctatctgacggccgtggaccggcggttgcagcagctgccgcaccaggcg
gagcgggaccgggcgcggatggccaaggtcgcggagatgcgggacgagtacgcgtggctg
ctggagcagttcccggccgggcgcccggtgccgcggcaggcccgggagatccgctggatg
atcgaggagctgcgggtgagctacttcgcgcacgcgctgggcaccgcgtacccgatctcc
gacaagcggatcgtgaaggccatcgacgcgctggtgccggggccggcgcgctga
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