Streptomyces xiamenensis: SXIM_32240
Help
Entry
SXIM_32240 CDS
T03904
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sxi
Streptomyces xiamenensis
Brite
KEGG Orthology (KO) [BR:
sxi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sxi03016
]
SXIM_32240
Enzymes [BR:
sxi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SXIM_32240
Transfer RNA biogenesis [BR:
sxi03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SXIM_32240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AKG44608
UniProt:
A0A0F7FVM4
LinkDB
All DBs
Position
3474257..3474820
Genome browser
AA seq
187 aa
AA seq
DB search
MRLFAALFPDDGALRELERAVRPLRREDAEGVRWTPVAGWHLTLAFYGEVPDELVPELRQ
RLGAVAAAGSTLTLRLAGGGRFGDRALWAGVDGDTEPLTALATAARDTGTTLGLLPDERP
GYVPHLTVALARRGARTALAPYAERLDAFAGRPWAAGELVLVRSETGPDGSRYSTEASWP
LGGGAGG
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgagacttttcgccgcgctcttcccggacgacggggcgctacgggaactggaacgggcg
gtgcgcccgctgcgccgcgaggacgcggagggcgtgcgctggacgccggtggccgggtgg
catctcacgctcgccttctacggcgaggtccccgacgaactcgtccccgaactgcggcag
cgcctgggggcggtggccgccgcagggagcacgctcaccctgcggctggcgggcggtggc
cggttcggcgaccgcgcgctgtgggccggggtggacggggacacggaacccctgaccgcc
ctggcgacggcggcccgcgacacgggcaccaccctgggcctgctgcccgacgagcggccc
gggtacgtaccgcacctgacggtcgccctcgcccggcgcggcgcgcgcaccgcgctggcc
ccgtacgccgagcgcctcgacgccttcgccggccgcccgtgggcggccggcgagctggtg
ctggtgcgcagcgagaccggtcccgacggctcccgctacagcacggaggcgtcgtggccg
ctgggtggcggcgccggcggctga
DBGET
integrated database retrieval system
