Streptomyces xiamenensis: SXIM_45030
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Entry
SXIM_45030 CDS
T03904
Name
(GenBank) Beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sxi
Streptomyces xiamenensis
Pathway
sxi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SXIM_45030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxi03019
]
SXIM_45030
Messenger RNA biogenesis [BR:
sxi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SXIM_45030
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
AKG45887
UniProt:
A0A0F7FYN0
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Position
4813807..4815492
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AA seq
561 aa
AA seq
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MSHPHPELGRPPKLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTSLRNRLDDIEGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGTSERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDGRLTDLRAFARLGEEGIDLLLSDSTNAEVPGFVSPEREISGVLRQVFARADKRIIVAS
FASHVHRIQQIVDAAQEHGRKIAFVGRSMVRNMGIARDLGYLRVPPGLVVDVRALDDLPD
RDVVLVCTGSQGEPMAALSRMANRDHQIRIVEGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPRNLMPVHGEWRHLRANAELGALTGVPAD
RIVIAEDGVVVDLVKGKAKIVGKVQAGYVYVDGLSVGGVTESSLKDRRILGDEGFISVFV
VVDSSTGKIVSGPSIHARGSGIDDAAFAEVIPKIDEVLAKSAQDGVVEAHQLQQLVRRTV
GKWVSDVYRRRPMIMPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccccatccagaactcggccggccgccgaaactcccggagggcggcctgcgg
gtcaccccgctcggcggcctcggcgagatcggccgcaacatgacggtcttcgagtacggc
ggccggctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggcatc
gacctgatcctgccggacttcacgtccctgcggaaccgtctcgacgacatcgagggcatc
gtcctcactcacggccacgaggaccacatcggtggcgtgccgtacctgctccgtgagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccgcatccgcccctacaccctggaggtggcggagggcaccagcgagcggatcggc
cccttcgactgcgaattcgtggcggtcaaccactcgatcccggacgcgctcgcggtcgcc
atccgtaccccggccggcatggtcgtgcacaccggcgacttcaagatggaccagctgccg
ctggacggccgcctcaccgacctgcgggccttcgcccggctcggcgaggagggcatcgac
ctgctgctgtcggactccaccaacgccgaggtccccggcttcgtctcccccgagcgggag
atctccggggtgctgcgccaggtcttcgcacgggccgacaagcggatcatcgtggcgagc
ttcgccagtcatgtgcaccgcatccagcagatcgtggacgccgcccaggaacacggccgc
aagatcgccttcgtgggccgttccatggtccgcaacatgggcatcgcgcgggacctgggc
tatctgcgggtcccgccgggcctggtggtggatgtgcgggcgctggacgatctcccggac
cgggacgtcgtgctggtgtgcaccggctcccagggcgagcccatggcagccctgtcccgg
atggccaaccgcgaccaccagatccgcatcgtcgagggcgacacggtcatcctggcctcc
tccctgatccccgggaacgagaacgcggtctaccgggtgatcaacggactgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccatgtgtccgggcacgcctcggcc
ggcgagctgttgtacttctacaacatctgcaagccgcggaacctgatgccggtgcacggc
gaatggcgccatctgcgcgccaacgccgaactcggcgcgctcaccggggtaccggccgac
cggatcgtgatcgccgaggacggcgtggtcgtcgacctggtcaagggcaaggcgaagatc
gtcggcaaggtccaggccggctatgtgtacgtggacggcctgtcggtcggcggcgtcacc
gagtccagcctgaaggaccggcggatcctgggggacgagggcttcatctccgtgttcgtg
gtggtcgacagcagcacgggcaagatcgtcagcggcccgagcatccatgcgcggggctcg
ggcatcgacgacgcggccttcgccgaggtcatcccgaagatcgacgaggtgctcgccaag
tccgcccaggacggcgtggtcgaggctcaccagttgcagcagctggtgcgccgcacggtg
ggcaagtgggtctccgacgtgtaccgccggcgcccgatgatcatgccggtcgtggtcgag
gtctga
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