Streptomyces xiamenensis: SXIM_50600
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Entry
SXIM_50600 CDS
T03904
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sxi
Streptomyces xiamenensis
Brite
KEGG Orthology (KO) [BR:
sxi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sxi03016
]
SXIM_50600
Enzymes [BR:
sxi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SXIM_50600
Transfer RNA biogenesis [BR:
sxi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SXIM_50600
Prokaryotic type
tRNA splicing ligases
SXIM_50600
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKG46444
UniProt:
A0A0F7G1T5
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All DBs
Position
5456154..5457347
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AA seq
397 aa
AA seq
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MSYTEVPGARVPIRMWADPATVEDQAMRQLQNVATLPWIEGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMTAVKTSLTANDLPGDLSRLRSRIEQSIPVGFGLHKEPVDPA
KIYGLPGAGWDDFWARFDGIAQQVRFRRERAGRQMGSLGGGNHFIEVCVDSHGVVWLMLH
SGSRNIGKELADFHIGQAQKLPHNQGLVDRDLAVFVADTPQMAAYRHDLFWAQEYARRNR
EVMMGLLRTVIIKEFKKAKPTFGDTISCHHNYVAEERYDGVDLLVTRKGAIRAGSGEFGI
IPGSMGTGSYIVKGLGNPASFQSASHGAGRRMSRNQAKKRFTTRDLAEQTQGVECRKDSG
VVDEIPGAYKPIEQVIDAQRDLVEVVAELKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgagctacaccgaagtgccgggcgcccgtgttccgatccggatgtgggccgatccggcg
accgtcgaggaccaggcgatgcgtcagctccagaatgtggcgacgcttccgtggatcgag
ggtctggccgtgatgcccgatgtgcacttcggaaagggtgccacggtcggttcggtcatc
gcgatgcgcggggcggtctgtccggccgcggtgggtgtcgacatcggctgcgggatgacg
gcggtgaagacctctctgaccgcgaacgatctaccgggcgatctctcccgactccgttcg
cgcatcgaacagtcgatcccggtcggattcggtctgcacaaggaaccggtggatccggca
aagatctacggactgcctggggcgggctgggacgatttctgggcccgcttcgacgggatc
gcccagcaggtccgtttccggcgggaacgggcgggccggcagatgggatcgctggggggc
ggaaatcattttatcgaagtatgcgtggacagccacggcgtggtatggctgatgctgcac
tccgggtcccgcaatatcggcaaggagctggccgacttccacatcggacaggcccagaag
ctgccgcacaaccagggactcgtggaccgcgatctggcggtgttcgtcgcggacaccccg
cagatggccgcctaccggcacgacttgttctgggcgcaggagtacgcccggcgcaaccgt
gaggtcatgatggggctgctgcgcaccgtgatcatcaaggagttcaagaaggcgaagccc
acgttcggcgacaccatctcgtgtcatcacaactatgtggccgaggaacggtacgacggc
gtggacctgctggtgacccgcaagggagcgatccgggcgggcagcggcgagttcgggatc
atccccggttcgatgggcaccggttcgtacatcgtcaaggggctcgggaacccggcctcc
ttccagtccgcctcgcacggcgcggggcggcggatgagccgcaaccaggcgaagaagcgg
ttcaccacacgcgatctggccgagcagacccagggcgtggagtgccgcaaggacagcggg
gtcgtggatgagatccccggcgcctacaagccgatcgagcaggtcatcgacgcccagcgg
gacctggtcgaggtggtggccgagctgaagcaggtggtgtgcgtcaagggctga
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