Staphylococcus xylosus SMQ-121: SXYLSMQ121_0835
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Entry
SXYLSMQ121_0835 CDS
T03311
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sxl
Staphylococcus xylosus SMQ-121
Pathway
sxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SXYLSMQ121_0835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxl03019
]
SXYLSMQ121_0835
03009 Ribosome biogenesis [BR:
sxl03009
]
SXYLSMQ121_0835
Enzymes [BR:
sxl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SXYLSMQ121_0835
Messenger RNA biogenesis [BR:
sxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SXYLSMQ121_0835
Ribosome biogenesis [BR:
sxl03009
]
Prokaryotic type
rRNA helicases
SXYLSMQ121_0835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_19
AAA_30
Flavi_DEAD
Cas3-like_C_2
UBA
Motif
Other DBs
NCBI-ProteinID:
AID42267
UniProt:
A0A5R9AZA8
LinkDB
All DBs
Position
919361..920887
Genome browser
AA seq
508 aa
AA seq
DB search
MQNFKELGISDKMAETLQSMGFDEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL
IEKVADQEGVQSLILAPTRELAMQVAESLKSFAKGQNVQVVTVFGGMPIDRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTTDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTML
FSATMPKAIQTLVQQFMKSPVIVKTMNNETSDPQIEEFYTIVKELEKFDTFTSFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIEQANK
RQMTALRPPHRKEVLKARENDIKGKVQNWMSRDSEPRLQRIATELIEEYNDVNLVAALLQ
ELVESNDDVDVQLTFEKPLSRGKGRQGKGGPKRGGGNHKRGGGKFDNKNRRSGKGGFNNK
KKNDRPSSDRNNNKKSSMKGRTFADHKK
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaattagggatctcagataagatggcagaaaccctacaatccatg
gggttcgatgaggccactcctatacaaaaagagagtatccctcttgccttagaaggcaaa
gatgttcttggtcaagcacagactggtacaggtaaaacaggtgcatttggtattccatta
attgaaaaagtggcagaccaagaaggcgttcaatcattaatccttgcaccaacaagagaa
ttagcaatgcaagttgctgaatcacttaaatcatttgctaaagggcaaaatgtacaagta
gttacagtatttggtggtatgccaatcgaccgtcaaatcaaagcgcttaaaaaaggacca
caaatcgtagtaggtacaccaggccgagtgattgatcacttaaaccgccgtacattaaaa
acaactgatattcatacgttaattttagatgaagcggatgaaatgatgaacatgggattc
atcgatgatatgaaatttatcatggataaaatacctgctgaacaacgtcaaactatgttg
ttctcagcaactatgcctaaagcaattcaaacattagtacaacaattcatgaaatcacct
gtcattgttaaaacaatgaacaatgaaacttctgatccacaaatcgaagaattttatact
attgtaaaagaattagaaaaattcgatacattcacaagctttttagatgtacatcaacca
gaattagctattgtatttggtcgtacaaaacgtcgtgttgatgagttaacaagtgcgtta
atttcaaaaggatacaaagctgaaggtttacatggtgatatcacacaagcaaaacgttta
gaagtattgaaaaaattcaaaaatgaccaattagacattttagttgcgacagatgttgca
gcaagaggattagatatttcaggcgtaagtcatgtttataacttcgacattcctcaagat
actgaaagttatacacacagaattggacgtactggtcgtgctggtaaaaaaggcgtagcg
attacatttgttaacccaattgaaatggattatatccgtcaaattgaacaagcaaataaa
cgtcaaatgacagctttaagaccacctcaccgtaaagaagtgcttaaagctcgtgaaaat
gacattaaaggtaaagttcaaaactggatgtctagagacagtgaacctagattacaacgt
attgctactgagttaattgaagaatataatgatgtgaatttagttgcagcattattacaa
gagttagttgaatctaatgatgatgttgatgttcaattaacatttgaaaaaccattatct
cgcggcaaaggtcgtcaaggtaaaggtggaccaaaacgtggtggtggaaatcacaaacgt
ggcggtggcaaattcgacaacaaaaatcgtcgttcaggtaaaggcggattcaacaacaag
aagaaaaatgatagaccttcttcagacagaaacaacaataagaaatcatcaatgaaaggt
cgcacatttgctgaccataaaaaataa
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