KEGG   Staphylococcus xylosus SMQ-121: SXYLSMQ121_1177
Entry
SXYLSMQ121_1177   CDS       T03311                                 
Name
(GenBank) RecD-like DNA helicase YrrC
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
sxl  Staphylococcus xylosus SMQ-121
Pathway
sxl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sxl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    SXYLSMQ121_1177
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sxl03400]
    SXYLSMQ121_1177
Enzymes [BR:sxl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     SXYLSMQ121_1177
DNA repair and recombination proteins [BR:sxl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     SXYLSMQ121_1177
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_RecD2 OB_YrrC SH3_13 UvrD_C_2 AAA_11 Viral_helicase1 AAA_22 HHH_5 AAA_12 nSTAND3 AAA Zeta_toxin NPHP3_N TsaE AAA_14 Rad17 AAA_16 T2SSE AAA_28 Mg_chelatase UvrD-helicase DUF815 ABC_tran AAA_18 AAA_29 SLFN-g3_helicase AAA_17 NB-ARC DUF3297 UvrD_C NTPase_1
Other DBs
NCBI-ProteinID: AID42608
LinkDB
Position
1295725..1298112
AA seq 795 aa
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDV
YTFKGQVVTHAKYGKQLKAETFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGEN
AISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQIIIRLHDLGFGPKLAMAIYQAY
LGETLNVVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSEL
KSVQNLYRNFSYTNKLKEIEQSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTG
GPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLGAPTGRASKRLSESTGLEAMT
IHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNF
INCTTEQIPSVVEKVVSSAVNKGYDMSDIQVLAPMYKGSAGIKKLNTVLKDILNPKEQDT
REIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEGNEI
TFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINP
MINMGEFSPYDFVED
NT seq 2388 nt   +upstreamnt  +downstreamnt
atggaaaaccctacactatttaacaattcaatgattaaagggaccgttgatgcgattttg
tttcaaaacaaagagaatttttatacggttttaaaagttgatacgattgaatccaatgag
acatttgattcaatgcctacaattgtagggtttttcccagatattgcagaaggtgacgtc
tatacatttaaaggccaagtagttacgcatgcaaaatatggcaaacaattaaaggctgaa
acatttgaaaaagagttaccacaaacgaaagaagcaattataagttatttatctagtgat
ctttttaaaggaataggtaaaaaaacagctcaaagtattgtaaataaattaggtgaaaat
gcaattagcgacatattaaatgatccaactatattagaaaaagtacctagtttacctaaa
aagaaacaaaaacaaattgctgaacaaatcgcaagtaatcaagaaacggaacaaattatc
attcgcctccatgatctaggttttgggccaaagttagcaatggctatataccaagcatat
ttaggagaaacacttaacgtagttgaaaagaaaccttatcaacttgtatatgatgtcaaa
ggcatcggttttaataaggcagacacattagcgcgtaatgtcggcattcaatttaacgat
gcagaacgtcttaaagcagggttactttatgtgttagaagaagaatgtataaaacaaggt
catacgtatttacctacgaataatgtactagagatgactcaagatatgctatcacaacca
ccaggtgaattaatagaaacacagcagttggagcaagttttacaagatttagttaatgac
actaaattaattcaacaagaaaatgaagttgcgattccaagtctatactattcagaattg
aaaagcgttcaaaatttataccgtaatttttcttatacaaataaactaaaagaaattgag
caatctgatttgctgcttgaaataggagaaattgaggaacgcaataaagtgacatatgca
gattctcaaagagaagccttgcaaacagcgattaactctaaaataatgttactgactggt
ggcccaggtacaggaaaaacaactgtcattaaaggaattgttgaactttatgcagagttg
catggtctatcattagattatgacgattatcaaaatgatgattatccagtagttctaggt
gcgccaactggacgtgcatcgaagcgtttgtcagagtcaactggtttagaggctatgacg
atacatcgcttaataggttggaatcaagatacacaaccagaagatattttagataatgaa
atttctgcaaaacttattattattgatgaaatgtctatggttgatacatggttattccat
caatttttgagtgctgtacctattgatgcgcaagttatactagtcggtgatgaagatcag
ctgccatctgttggaccaggccaagtatttaaagatttaattgattcgaaagtaattcct
cgtgtaaatttaactgaagtttaccgacaacaagatggttcaagtattattgaattagcg
cataggatgaaactaggagaaactattgatattacacagagatttcatgaccgtaatttt
ataaactgtacaacagaacagataccttcagttgttgaaaaagtggtgtcaagtgcagtg
aataaaggttatgatatgagtgatattcaagtattagctccgatgtataaaggatctgca
ggtattaagaaactaaatacagtattgaaagatatcttgaatcccaaagaacaagatact
agagaaattgagtttggtgatattgtctttagaaaaggtgataaggtattacaactagtt
aaccgaccaagcgataatatatttaatggtgatatcggggtcattgtaggcatcttctgg
gctaaagaaaatgcattaaacaaagatgtattggtagttgattttgaaggtaatgagatt
acatttgttcgtcaagacttaatggagttgacgcatgcctattgtacttcaatccataag
tcacaaggatcagaatttccgattgtgattatgccaatggttaaacagtactttagaatg
cttcaaaaacctattttatatacaggtttaacacgtgctaaacagtcacttgtgttctta
ggagatccacaagcatttgatattggtctaaagactcacggccaagtgagaatgacacaa
ttgtgtgcttttcttaaagcgtattttaataatgaggaagaaactgaaactgctgatgtc
agtaaatcctttgattcagatattatattatctgaagaaaatatatttaaaataaatcca
atgattaatatgggtgaattttccccgtatgacttcgttgaagattga

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