Staphylococcus xylosus SMQ-121: SXYLSMQ121_1518
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Entry
SXYLSMQ121_1518 CDS
T03311
Name
(GenBank) Hydrolase (HAD superfamily)
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sxl
Staphylococcus xylosus SMQ-121
Pathway
sxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SXYLSMQ121_1518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxl03019
]
SXYLSMQ121_1518
Messenger RNA biogenesis [BR:
sxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SXYLSMQ121_1518
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Glt_symporter
Motif
Other DBs
NCBI-ProteinID:
AID42949
LinkDB
All DBs
Position
complement(1642023..1643582)
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AA seq
519 aa
AA seq
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MNLLSLLLILLGIILGVVVGYVVARNILHQKQLQARQTADDIIEQGNKEAENTKKEKLLE
AKEENQVIREKAENELRERRADLQKQEARLLQKEENLERKSDLLDKKDEILEQKESKLEE
RQQQVDAKESSVQTLINKHEQELERISGLSQEEAAQEQLQRVEEELSQDIAILVKEKEKE
AKEAVDKNAKELLATTVQRLAAEHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVDKARKEVDDIIRD
AGEQATFEINVHNMHPDLVKILGRLQYRTSYGQNVLKHSIEVAHLSGMLAAELGEDVTLA
KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGENETVINAIHSHHGDVEPTSIISILVA
AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVIVSPDTIDD
LKSHRLARDIKSQIEDELQYPGHIKVTVVRETRAIEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
gtgaatttgttaagcctcctactcattttgctaggtattattctcggagttgttgtaggg
tacgtcgttgcccgaaatatattgcatcaaaagcaattacaagcaagacagactgccgat
gatattatcgaacaaggtaataaagaagcagagaatactaagaaggaaaagcttctagaa
gctaaagaagaaaaccaagtcataagagaaaaagctgaaaatgagcttcgcgaaagacgt
gcagatcttcaaaagcaagaagcaagacttctacaaaaagaagaaaacttagagcgaaaa
tctgacctgttagataaaaaggatgagattttagagcaaaaagagtctaaacttgaagaa
cgacaacaacaagtagatgcaaaagagagtagtgttcaaacattaataaataagcatgaa
caagaattagaacgcatctctggtctctctcaagaggaagctgcacaagagcaacttcaa
agagttgaagaggaattgtcacaagatattgctatacttgttaaggaaaaagagaaagaa
gcaaaagaagcagtcgataaaaatgcaaaagagttattagcaactactgttcaaagatta
gctgcagaacatacatctgaatcaacagtatcagttgttaatttaccaaatgacgaaatg
aaaggtcgaatcattggtagagaaggtagaaatattagaactttagaaacgttaactggt
attgatttaattatagatgatacaccagaagcggttattctctctggttttgacccaatt
agacgtgaaattgcaagaactgcattagttaatcttgtttcagatggtcgtatccatcct
ggacgtatagaagatatggtagataaagctcgaaaagaagtagacgatatcattagagat
gctggggaacaagctacgtttgaaataaatgtgcataacatgcatccagatttagtgaaa
atcttaggtcgtttacagtatcgtactagttatggacaaaatgtattgaaacattctatt
gaagttgcacacctaagtggtatgttggcagcggaattaggagaagacgttacattggct
aaacgtgctggactacttcatgacgttggtaaagcaattgatcacgaggttgagggaagc
catgttgaaattggtgttgaattagctaaaaaatatggtgagaatgagacagttatcaat
gcgattcattctcatcatggtgatgtcgaaccgacttctattatttctatattagtggca
gctgccgatgcattatcagcagcgagaccaggagctcgtaaagagacattagaaaactat
attagaagattggaaagactagaaacactttcagaaagctatgatggtgttgagaaagca
tttgcgatccaagcgggtagagaaattcgagttatcgtatcaccagatactatcgacgac
ttaaaatcacatcgcttagcaagagatattaagagccaaattgaagatgaacttcaatat
cctggccatataaaagtgacagttgttcgtgagactagagcaattgaatatgcaaaataa
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