Staphylococcus xylosus SMQ-121: SXYLSMQ121_1529
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Entry
SXYLSMQ121_1529 CDS
T03311
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sxl
Staphylococcus xylosus SMQ-121
Pathway
sxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SXYLSMQ121_1529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxl03019
]
SXYLSMQ121_1529
Messenger RNA biogenesis [BR:
sxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SXYLSMQ121_1529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
vATP-synt_E
SBE2_C
Motif
Other DBs
NCBI-ProteinID:
AID42960
UniProt:
A0A418IBD8
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Position
complement(1655488..1657161)
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AA seq
557 aa
AA seq
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MSLIKKNNKNIRIIPLGGVGEIAKNMYVVEVDDEMFMLDAGLMFPEDEMLGVDIVIPDIQ
YVIENKDKLKGIFLTHGHEHAIGAVTYVLEQVDAPVYGSKLTIALIKENMKARNINKKVR
YYTVNNESIMRFKGVNVTFFNTTHSIPDSLGVCIHTSYGAIVYTGEFKFDQSLQGHYAPD
LKKMTEIGEAGVFALISDSTEAEKPGYNTPENVIESHMYDAFTKVKGRLIVSCYASNFIR
IQQVLNLAQRLNRKVSFLGRSLESSFNTARKMGYFDISKDLLIPINEVENYPKNEVIIIA
TGMQGEPVEALSQMAKKKHKIMNIEPGDSVFLAITASANMEVIVGNTLNELVRAGAEIIP
NSKKIHTSSHGCMEELKMMINIMKPQYFIPVNGEFKMQIAHAKLANEAGVQPEKIFLVEK
GDVVNYDGEEMILNEKVHSGNVLIDGIGVGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
RIAAGPEIQSRGFVYVRESEALLNEAEEKVREIVELGLQEKRIEWSEIKQNMRDQISKLL
FENTKRRPMIIPVISEI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttaataaagaaaaataataaaaatattcgcatcattccactcggaggagttgga
gagatagcgaaaaatatgtatgtcgtcgaagtagatgacgaaatgttcatgcttgacgct
ggcttaatgttcccagaagatgagatgttaggtgtagatattgttataccagatattcaa
tacgttattgagaacaaagataaattaaaagggatctttttaacgcatggtcacgaacat
gcaattggtgctgttacgtatgtattagaacaagttgatgcaccagtttatggatcgaaa
cttacaatagctttaattaaagagaatatgaaagcacgcaatattaataaaaaagtaaga
tattatacggttaataacgaatctatcatgcgtttcaaaggtgttaatgtaacattcttt
aatacaacacacagtattccagatagtttaggtgtatgcattcatacttcatacggtgca
attgtatatacaggtgaatttaaatttgaccaaagtttacaagggcattatgcaccggac
ttaaagaaaatgactgaaattggtgaagcgggagtgtttgcgttaatcagtgattctact
gaagcagagaaacctggatataatacacctgaaaatgtaattgaatcacatatgtatgat
gcgtttacaaaagtgaaaggccgactgattgtgtcttgctacgcatctaacttcattcgt
attcaacaagttttaaatcttgcacaaagattaaataggaaagtgtcattcttaggtcgt
tcattggagagctctttcaatactgctagaaaaatgggttacttcgatatatcaaaagac
ttattaattccaattaatgaagttgagaattatcctaaaaatgaagtcattattattgct
actggtatgcaaggtgagcctgtagaagctttaagccaaatggctaagaaaaaacacaaa
ataatgaatattgaaccgggagattctgtatttttagctatcactgcttctgctaatatg
gaagtgattgtcggaaatacacttaatgaattagtacgtgctggtgcagaaatcattcca
aatagtaaaaagattcacacttcaagccatggttgtatggaagaattgaagatgatgatt
aatattatgaaacctcagtactttattccggttaacggtgaatttaaaatgcagattgca
cacgctaaattagcaaatgaagcaggcgtgcaacctgaaaaaatctttcttgtcgaaaaa
ggcgacgtagttaattacgatggggaagaaatgattctaaatgagaaagttcactctggt
aatgtattaattgatggtatcggagtcggtgatgtcggcaatatcgtacttagagatcgt
catttgttagcggaagatggtatctttatcgcagttgtaacacttgatcctaaaaataga
cgaattgctgccggcccagaaattcaatctagaggtttcgtatatgtaagagaaagcgaa
gctttattaaatgaagctgaagaaaaagtccgtgaaatcgttgaactaggtttacaagag
aaacgtatcgaatggtctgaaattaagcaaaacatgcgtgatcaaattagcaagctttta
tttgaaaatacaaaacgtcgtccaatgattattccagtaatttctgaaatttaa
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