Staphylococcus xylosus SMQ-121: SXYLSMQ121_1911
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Entry
SXYLSMQ121_1911 CDS
T03311
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sxl
Staphylococcus xylosus SMQ-121
Pathway
sxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SXYLSMQ121_1911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxl03019
]
SXYLSMQ121_1911
03016 Transfer RNA biogenesis [BR:
sxl03016
]
SXYLSMQ121_1911
Enzymes [BR:
sxl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SXYLSMQ121_1911
Messenger RNA biogenesis [BR:
sxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SXYLSMQ121_1911
Transfer RNA biogenesis [BR:
sxl03016
]
Prokaryotic type
tRNA degradation factors
SXYLSMQ121_1911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
Rho_RNA_bind
S1_RRP5
TBPIP_N
Motif
Other DBs
NCBI-ProteinID:
AID43342
LinkDB
All DBs
Position
complement(2060118..2062505)
Genome browser
AA seq
795 aa
AA seq
DB search
MNLKQSIEEIIKQPDYEPMSVSDFQDALGLNSADSFRDLIKVLVELEQTGLIQRTKTDRY
QRKESQKSKQPKLIKGKLSQNKKGFAFLRPEVEDMDDIFIPPTKINRAMDGDTVLVEVHQ
SKGDHKGKVEGEVKTIETHSVTQVVGTYSEARHFGFVLPDDKRIMQDIFIPKGQNLGAVD
GHKVLVQITKYADGTDNPEGIVSAILGHKNDPGVDILSIIYQHGIEIEFPDNVLAEAEAV
PDQIEPSEISGRHDLRDELTITIDGADAKDLDDAISVKKLSNGNTQLTVSIADVSYYVTE
GSALNEEAYSRATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCQMELNERGEVVKH
EIFDSVIHSNYRMTYDEVNEIITDQNAETRNKYSEVTPMLDLAQDLSQRLVDMRRRRGEI
DFDIDEAKVLVNEEGIPTDVQLRKRGEGERLIESFMLAANETIAEHFDRLEVPFIYRVHE
QPKSERLRQFFDFVTNFGLMIKGTGEDIHPSTLQKIQQEVEGQPEQMVISTMMLRSMQQA
RYDDVNLGHFGLSAEYYTHFTSPIRRYPDLIVHRLIRKYIVEQSMDRKERNKWEEALPEI
AEHTSQRERRAIEAERDTDELKKAEYMVQHIGEEFEGIISSVANFGMFIELPNTIEGMVH
VSNMTDDYYHFDERQMAMIGERQAKVFRIGDPVEIKVINVDVDERMIDFQIVGMPLPKNE
RGQRPSRGKTIQANPRGKSSDKSKDDRNNKGNRTKQKQRKGKNKRNNGKQEQGNTKHKPF
YKDKNVKNKARKKKK
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatccattgaagaaattataaaacaaccagattatgaaccaatgtct
gtgtctgattttcaagatgcattaggtttaaatagtgccgactcatttagagacttaatt
aaggtgcttgttgaattagaacaaacaggtttaattcaacgtacaaaaacagatagatat
caacgcaaggaatcacaaaagtccaaacaaccaaaattaataaagggtaaacttagccaa
aataaaaagggctttgcattcttacgtccagaagtagaggacatggatgacatctttatc
ccacctacaaagataaacagagctatggacggtgatacagtcctagttgaggtgcaccaa
tctaaaggggaccataaagggaaagttgaaggcgaagttaaaactatagaaacacattcg
gtcactcaagtggttggtacctatagtgaagcacgtcatttcggttttgtattaccagac
gataaacgaattatgcaagatatctttattccaaaaggtcaaaatcttggagccgttgat
ggccacaaagtgctcgtacaaattacaaaatatgccgatggtacagacaatccagaaggt
attgtttcagcaattttaggacacaagaatgacccaggtgtcgatatcttatcaatcatt
tatcaacatggtatcgaaattgaatttccagataatgttttagcagaagctgaagcagtt
ccagatcaaattgaaccatcagaaatttcaggacgtcacgacttacgtgatgaattgaca
attaccatcgatggcgcagatgcaaaagatttagatgatgctattagtgttaaaaaatta
agcaacggtaatacacaattaacagtaagtattgcagatgtaagttactatgttactgaa
ggctcagcattaaatgaagaagcctatagtcgtgcaacaagtgtatatttagttgaccga
gtaattccaatgattccacatcgtttaagtaacggtatctgttcattaaatcctaaagta
gatagattgaccttaagttgtcaaatggagcttaatgaacgtggtgaagttgttaaacat
gaaatttttgatagtgtaattcattcaaattatcgtatgacttatgatgaagtaaatgaa
attataacggatcaaaacgctgaaactcgtaataaatatagtgaagttacgccaatgctt
gatttagcacaagatctatcgcaacgtttagtagatatgagaagacgccgtggtgaaatt
gacttcgatattgatgaagcaaaagtacttgtcaatgaggaaggtatcccaactgatgtt
caattaagaaaacgtggcgaaggtgaacgcttaatcgaatcatttatgttagctgctaat
gaaacaattgctgaacactttgatcgtttagaagtaccatttatttatcgtgtccatgag
caacctaaatcagaacgtctacgccaattctttgactttgtaactaattttggtttaatg
attaaagggacaggagaagatattcacccatccactttacagaaaatccaacaagaagtt
gaaggtcaaccagaacaaatggttatttcaactatgatgttacgttcaatgcaacaagca
cgttatgatgatgtaaacttgggtcactttggtttatcagcagagtattatacgcatttc
acatcaccgatacgtagatatcctgatttaattgtgcatagattaattcgtaagtacatt
gtagaacagtctatggacagaaaagaaagaaacaaatgggaagaagcattgcctgaaatt
gctgaacatacgtcacaaagagaacgtagagcgatagaagctgaacgtgacacagatgag
ctgaagaaagccgaatatatggtacaacatatcggtgaagagttcgaaggtatcattagt
tcagttgcaaactttggtatgttcattgaattaccaaatacaattgaaggtatggtgcat
gtatccaacatgacagatgactattatcattttgatgagcgtcaaatggctatgattggt
gaacgccaagctaaagtattccgtataggtgatcctgtagagatcaaagtaatcaatgtt
gatgttgatgaacgcatgattgatttccaaattgtaggtatgccattacctaaaaatgaa
cgtggtcaaagaccttcgcgtggtaagacgattcaagctaacccgcgtggtaaatcatca
gacaaatcaaaagatgatcgaaacaataaaggtaaccgaacgaaacagaaacaacgcaaa
ggtaaaaataaacgtaataatgggaaacaagaacaaggtaatacgaaacataaaccattt
tacaaagataaaaatgtgaaaaataaagcgcgcaagaagaaaaaataa
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