Staphylococcus xylosus SMQ-121: SXYLSMQ121_2222
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Entry
SXYLSMQ121_2222 CDS
T03311
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sxl
Staphylococcus xylosus SMQ-121
Pathway
sxl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sxl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SXYLSMQ121_2222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sxl03021
]
SXYLSMQ121_2222
03400 DNA repair and recombination proteins [BR:
sxl03400
]
SXYLSMQ121_2222
Enzymes [BR:
sxl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SXYLSMQ121_2222
Transcription machinery [BR:
sxl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SXYLSMQ121_2222
DNA repair and recombination proteins [BR:
sxl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SXYLSMQ121_2222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AID43653
LinkDB
All DBs
Position
complement(2382377..2386000)
Genome browser
AA seq
1207 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVNPGPTGLEKKTLLSEAEFREYYDKFPGKFTAKMGAEGIKELLE
EIDLDGELKHLRDELESATGQRLTRAIKRLEVVESFRHSGNNPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFIMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLATTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKEAVNTGTIYNDTNEVLKAYANGYVHLHTRIGVH
ASSFNNPTFTEEQNKKILLTSVGKVIFNEIIPDSFAYINEPTQTNLENKTPERYFIAPTE
IGEGGLKAYFDEQELIKPFNKNFLGNVIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVSDIVVLPDKQDILDKHEKLVDRITKQFNRGLITDFERYNAVIEIWTDAKDQIQNEL
MGSLEETNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGEIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPETDEVIVNPDQLVTPEIAKKITDAGIEEMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIVIKGANETKSYLASGTSRLKVEVGQ
GVERGEVLTEGSIEPKNYLSVSGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHSFTDANREAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDNLLGLKENVIIGKLIPAGTGMRRYRDVEYNKATPDTEIVE
EVQTTEI
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaataggacttgcttcacccgaaaaaatc
cgttcatggtcttttggtgaggttaaaaagccagaaacaattaactatcgtactttaaaa
ccagaaaaagatggtctattctgtgaaagaatattcggacctacgaaagactgggaatgt
agttgtggtaaatacaaacgcgtacgctataaaggtatggtttgtgacagatgtggcgta
gaagtgactaaatctaaagtgcgccgtgaaagaatggggcatattgaattagcagcacct
gtatctcacatttggtacttcaaaggtattccaagtcgtatgggtctattattagacatg
tcaccaagagcgttagaagaagttatttactttgcttcatacgttgttgttaatccaggt
ccaactggattagagaaaaagacattgttatctgaagcagaatttagagagtactatgat
aaattcccaggcaaattcactgctaaaatgggtgctgaaggtattaaagaattacttgaa
gaaatagacttagatggtgaacttaaacatttacgtgatgagctagaatcagctactggt
caaagacttacacgtgcgattaaacgtttagaagttgttgaatcatttagacattctggc
aataatccagcttggatgattttagacgtacttcctattattccacctgaaatcagacca
atggttcaattagatggtggccgtttcgcaacaagtgatttgaatgatttatatcgtcgt
gttatcaaccgtaacaaccgtttaaaacgtttattagacttaggtgctcctggcatcatc
gttcaaaacgaaaaacgtatgttacaagaagctgttgatgcgcttattgataatggtcgt
cgtggccgtccagttactggaccaggtaaccgcccattaaaatcactttcacatatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttattaggtaaacgtgttgactactcaggt
cgttcagttattgcagttggaccaagcttgaagatgtatcaatgtggtctgcctaaagaa
atggcgcttgagttgtttaagccgttcataatgaaagaattagtacaacgtgaaattgca
acaaacatcaaaaatgcgaaaagtaaaattgagcgtatggatgacgaagtatgggatgta
ttagaagacgtaattaaagaacatccagttcttttaaaccgtgcacctacacttcacaga
ttaggtatccaagcattcgaacctacattagttgaaggtcgtgcaatccgtctgcatcca
cttgctacaacagcatacaacgctgactttgatggtgaccaaatggctgttcacgtacca
ttatctaaagaagcacaagctgaagcgcgtatgttaatgttagctgcgcaaaacatcttg
aatcctaaagatggtaaaccagttgttacgccatcacaagatatggtattaggaaactat
tacctaactcttgagcgtaaagaagctgtgaatactggtacgatttacaatgatacaaat
gaagtactcaaagcatatgcaaatggctatgttcacttgcatacacgtattggtgtacac
gcatcatcattcaataacccaacgtttactgaagagcaaaacaaaaaaatcttgctaact
tctgttggtaaagtaatattcaatgaaatcattccagattcatttgcatatattaatgag
ccaacacaaacgaacttagaaaataaaacgccggaaagatacttcattgcaccaactgaa
attggtgaaggtggattaaaagcttactttgatgagcaagaattaatcaaaccgttcaat
aagaatttcttaggaaatgttattgctgaagtgtttaaccgtttcagtatcactgatacg
tcaatgatgttagatagaatgaaagacttaggattcaagttctcatctaaagcaggtatt
actgttggtgtatctgatatcgttgtattaccagataaacaagatatacttgataaacat
gaaaaattagttgatagaataactaaacaattcaatcgtggtttaatcactgattttgaa
cgttacaatgctgtaattgaaatttggactgatgcaaaagaccaaattcaaaatgaacta
atgggatcacttgaagaaacgaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcatctaactttacacaattagctggtatgcgtggacttatggctgcaccatctggt
gagattattgaattaccaatcacttcatcattccgtgaaggtttaacagtattggaatac
ttcatctctactcacggtgcgcgtaaaggtcttgccgatacagcacttaagacagccgat
tcaggttatctgactcgtcgtcttgttgacgtggctcaagatgttatcgtccgtgaagaa
gattgtggtactgaccgtggattacttgtttctgatatcaaagaaggtacagaaatgatt
gaaccattcatcgaacgtattgaaggtcgttattctaaagaaacaattcgtcatccagaa
acagatgaggtcattgttaacccagatcaattagttacgccagaaatcgctaagaaaatc
acagatgcaggtatagaggaaatgtatatccgttcagcatttacatgtaatacgcgtcat
ggtgtatgtgaaaaatgttacggtaaaaaccttgcaactggtgaaaaagttgaagttggt
gaagcagttggtacaattgctgcccaatcaattggtgaaccaggtactcagcttacaatg
cgtacattccatacaggtggtgtagcaggtagcgatattacacaaggtcttcctcgtatc
caagaaattttcgaagcacgtaatcctaaaggtcaagctgtaattactgaaatagaaggt
gtcgtagatgacatcaaacttgctaaagatcgtcaacaagaaatcgtaattaaaggtgct
aacgaaacgaaatcttatctagcttctggtacttcaagattgaaagtagaagttggacaa
ggtgttgaacgtggagaagtacttactgaaggttcaatcgaacctaagaattatttatct
gtatcaggtttaaatgctacagaaagctatctattaaaagaagttcaaaaagtttaccgt
atgcaaggtgtagaaatcgacgataaacacgttgaagttatggtaagacaaatgttacgt
aaagtacgtatcattgaagcaggagatactaagctattacctggttcattagtagatatt
catagctttactgatgctaaccgtgaagcgtttaaagaacgtaaacgtcctgcaacagct
aaacctgtcttactaggtattacgaaagcttctcttgaaactgaaagcttcttatcagca
gcttcattccaagaaacaactcgtgtacttacagatgcagcaatcaaaggtaaacgtgat
aacttactcggacttaaagagaacgttattatcggtaaattgattccagctggtactggt
atgagacgttatagagacgttgaatataacaaagcaacaccagatactgaaattgttgaa
gaagttcaaactactgaaatataa
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