Shewanella xiamenensis: MKD32_03225
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Entry
MKD32_03225 CDS
T08228
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKD32_03225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxm03019
]
MKD32_03225
03009 Ribosome biogenesis [BR:
sxm03009
]
MKD32_03225
Enzymes [BR:
sxm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MKD32_03225
Messenger RNA biogenesis [BR:
sxm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MKD32_03225
Ribosome biogenesis [BR:
sxm03009
]
Prokaryotic type
rRNA helicases
MKD32_03225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
HD_4
Cas3-like_C_2
AAA_19
Flavi_DEAD
TetR_C_11
Motif
Other DBs
NCBI-ProteinID:
UML94356
LinkDB
All DBs
Position
complement(718676..720547)
Genome browser
AA seq
623 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFIKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILEHTPSER
QLALFSATMPEQIKRVANQHLRSPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRNGMAILFVTSREMRMLRTIE
RATNSRISPMKVPSPETVAERRLSRLGEQLAQTMNNDLEFMREAVAQLCQQLEVDTDLLA
AALLHQVQQERPLQLPAIQERVRDERSERSERSSDRGADRGERRSRESRPMPASLGSAEA
LKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDSVTTVDLPDGM
PKDVLQHLKKVRVCGKPLNIREAGDQVFVDSGRGARSDRRPRSDRPAGDRKPRAASGDKP
FADRKPRSDKPAGERRPRKPREE
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggtctatccgagaatttgttgcgtgct
cttgacgagctaggttatgaaaaaccaacgccaatccaatcagccagtattgatccactt
atggctggcaaagatattttaggtcaagcgcaaacaggtacaggtaaaactggcgccttc
gcgctgccgctgctgaataaagtcaccagccaaaccacaccacaaattttagtattagca
ccaacgcgtgaacttgcagttcaagttgctgaagcgttcagtagctatgccaaatttatt
aagaatttccatgtactgccgatctacggtggtcaaagcatgcaacaacagttgaatgcc
ctcaaacgtggtccacaagttatcgtgggtacgcctggtcgtgtaatggaccatatgcgt
cgtggcacgttaaaactcgattcattaaaagcactcgtgctcgatgaagccgacgaaatg
ctaaaaatgggcttcatcgatgatatcgaatggatccttgagcatacgccaagcgagcgc
caattagcactattctcggccacaatgccagagcaaattaaacgtgttgctaaccagcat
ttacgtagccctgtgcatgtgcgtatcgagtctagccaaacgacagttgagtcaatcgag
caacgcttcgtacaggtatcacaacacaataaattagaagcattagtacgcgtattagaa
gttgaaaatactgaaggtatcatcatcttcgttcgtactcgtaactcatgtgttgaatta
gctgaaaaacttgaagcccgtggctatgcatcatcgcctttacatggtgatatgaaccaa
caagcccgtgagcgtgcagttgaacaactcaaaaacggcaagctagacattctgatcgcg
actgacgttgcggcccgtggtctggacgttgaacgtattggccacgtagtaaactacgat
attccatacgatacagaagcttacgttcaccgtatcggtcgtactggccgcgctggtcgt
aatggtatggcaattctgttcgtcactagccgtgaaatgcgtatgctgcgcactatcgag
cgtgcgactaacagccgtatttcgccaatgaaagtaccaagcccagaaaccgttgcagaa
cgtcgcctgtcacgcttgggtgagcagctcgctcaaaccatgaacaacgatctcgaattt
atgcgtgaagccgttgctcagttatgccagcaacttgaagtagataccgatctgctcgcg
gctgccctactgcaccaagttcagcaagaacgtccactgcaattacctgcgattcaagaa
cgtgttcgtgatgaacgcagtgagcgtagcgaacgtagttcagaccgcggtgctgaccgt
ggcgaacgccgtagccgtgaatctcgtccaatgccagcaagcttaggcagcgctgaagcg
ttaaaagacaatccagacctgaaaatgtgccgttatgtgattgacgtaggtcgtgaaaat
ggcgtaggtgtaggcaatatcgttggcgctatcgcaaacgaagccaatatcgacagccgt
tatatcggtgcaatccaactttatgattcagtgacaactgttgacctgccagacggcatg
ccaaaagatgtactgcaacacctgaagaaagtgcgtgtgtgtggtaagccattgaatatc
cgtgaagctggcgaccaagtctttgttgactctggccgtggtgcccgtagcgaccgtcgt
ccacgtagcgaccgcccagcgggtgatcgcaagccacgtgcagcgtctggtgacaagccg
tttgcagaccgcaaaccacgttcagacaagccagcaggcgaacgtagaccacgtaaacca
cgcgaagagtaa
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