Shewanella xiamenensis: MKD32_05815
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Entry
MKD32_05815 CDS
T08228
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
sxm
Shewanella xiamenensis
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxm03400
]
MKD32_05815 (phrB)
Enzymes [BR:
sxm01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
MKD32_05815 (phrB)
DNA repair and recombination proteins [BR:
sxm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
MKD32_05815 (phrB)
Prokaryotic type
MKD32_05815 (phrB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
UML94830
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All DBs
Position
1331592..1333130
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AA seq
512 aa
AA seq
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MSINQCGLDKQALMWFRQDLRLTDNQAFTAACDWVRQHHATKLKAIYIATPSQWRRHDIA
PIQLDFIQRHVNLLAQGLASLGVEFELIQLDSFKDIPAFLTGYCEEHSIGRVFAGREPEI
NEQKRDQACIEAGIPLVLSDEHCLLPPGTVLNLSGDMYRVFTPFSRKWREVAAKQPIVPL
GVPAPLGPILSEPKPLFFKNIGFADSPANKGIAPSETGLNQTISTPLISSEQWAAGEGQA
KRLLNQFIQQKVQDYKQDRDFPAIDGTSVISPYLAIGVLSPRQCVAALLQRFPEVMVDDT
SPGRTWLNELIWREFYRHLLVAFPDLSKGHNFNRQADHVPWRNNRDEFLAWCEGKTGYPI
VDAAMRQLNQTGWMHNRLRMVVASFLTKHLLIDWRWGERYFRQHLIDGDLAANNGGWQWS
AGCGCDAQPYFRIFNPMSQSEKFDPDGRFIRKYLPELASWGVKRLHQPNQQKMPSLFEAP
LFASQADYPYAIVEHNAARARALTVLGVLKKA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaatcaatgcggtttggataaacaggcgttaatgtggtttcgccaagatctg
cgccttactgataatcaagcgtttacggcagcctgtgattgggtaaggcaacatcatgcc
accaagcttaaagcgatttacattgccaccccaagtcaatggcgtcgccatgatatcgcg
ccaattcaactcgactttattcagcggcatgtgaatctactggcccaaggactggcgagt
ttaggggttgaatttgaactcattcaacttgatagctttaaagatattcccgcattttta
acgggttattgtgaagagcatagtattggacgggtatttgcaggacgagaacctgagatc
aatgagcaaaagcgcgatcaagcttgtattgaagcggggattcctttggtgcttagtgat
gaacattgcttattaccaccgggaactgtgcttaatttaagcggtgacatgtatcgggtg
tttactccttttagccgcaagtggcgagaggttgccgcaaagcagcctattgtgccgctg
ggtgtgccagcaccgcttggtcctatcttatcggagcctaagccattattttttaaaaat
atcggctttgctgattctcctgctaacaagggcatagcgccatcagaaacaggtttaaat
caaaccatatcaaccccgcttatctcgagtgaacagtgggcggcaggtgaggggcaagcc
aagcggctgcttaatcaatttattcagcaaaaagtgcaagactataagcaagatagagat
ttccccgccattgatggcaccagtgttatctccccttatctggcgattggtgtactcagc
ccaaggcaatgtgtcgcggcgcttttacaacgtttccctgaggtaatggttgatgacact
agccccgggcgtacatggctaaatgagctgatttggcgggagttctaccgtcatttgctg
gtggcttttcctgatttatccaagggacacaattttaatcgccaagccgatcatgtgccg
tggcgcaacaatcgcgatgagtttttagcttggtgcgagggcaaaaccggctatccgata
gtggatgcggctatgcggcaacttaatcaaacgggctggatgcacaatcgtttacgcatg
gtggtggcgagctttttaaccaaacatctgctcattgattggcgttggggcgagcggtat
ttccgccagcatcttatcgacggcgatctggcggctaacaacggcggttggcagtggtcg
gcaggatgcggttgtgatgcgcagccgtattttcggatttttaatcctatgagccagagc
gaaaagtttgatccagatggccgctttattcgtaagtacttaccagaactcgcatcttgg
ggcgttaagcgattgcatcaaccgaatcagcaaaaaatgccttcgttgtttgaagcaccg
ttatttgcatcgcaagcggattatccctatgcgattgttgagcacaatgcggcaagagca
agagcgctgacggtactgggtgtgctgaaaaaggcttag
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