Shewanella xiamenensis: MKD32_07190
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Entry
MKD32_07190 CDS
T08228
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MKD32_07190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sxm03000
]
MKD32_07190
03400 DNA repair and recombination proteins [BR:
sxm03400
]
MKD32_07190
Enzymes [BR:
sxm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
MKD32_07190
Transcription factors [BR:
sxm03000
]
Prokaryotic type
Helix-turn-helix
AraC family
MKD32_07190
DNA repair and recombination proteins [BR:
sxm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
MKD32_07190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HTH_3
HhH-GPD
DUF6233
Motif
Other DBs
NCBI-ProteinID:
UML95074
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All DBs
Position
1603998..1605623
Genome browser
AA seq
541 aa
AA seq
DB search
MKLIAVSPKPTTKPLVVPVVNDLQECYLSATICREARISRDPRFDGKFFVGVLSTGIYCR
TVCPAVAPKEENVRYFDSAIKAAQAGLRPCLRCRPDSAPGSNPWKGTGTTLDRAIGLIEA
GALSGEHGLTVEALADKLGISSRYLNKLFTSGFGTSPKQFALYRQLMFAKQLLHQTQLPI
TQVALAAGFNSIRRFNEAFQQTLQLTPTQLRKSSLKSTAKLEEGERTNKASPQQMPAHSL
SLYQYYRPPLDWPAQLAFYRLRAVAGMEWFCEGGNHDSNDMMSQDTLEYGRTLQLEDIRA
VVRIAHEAHLHRFKITLTLTPDSPLAGLQKLITQVRRILDLDADMQLIEHKLQRLTDLKL
IPKSGLRIPGAGSLFEAGCRAVLGQQVSVVQATKLLNLLVEAYGERFSLNGQEYRLFPTP
QLIRHACLDELKMPGARKLALNALAAFICEHPEATADEWIGVKGIGPWTIAYAKLRGLGD
PNIFLHTDLIVKKQLLATMGEQTGLDTEAQKQLDYSAIVERVSADIAPWGSYLTFLLWSN
A
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgatagcagtgagtccaaaaccaaccactaaaccactagtcgtgccggtagta
aacgatttgcaagagtgctacttatccgcgacgatttgccgcgaggctcgcatcagccgt
gatccacgttttgacggtaagttctttgtgggcgtgttaagtacgggcatttactgccga
acggtgtgccctgccgttgcacctaaagaagaaaacgtacgttatttcgactcggccatt
aaagccgcacaggcggggctgaggccttgcctacgttgccgcccagacagtgcaccaggc
tctaatccgtggaaaggtacaggcacaaccctagacagagctataggtttgattgaagct
ggcgccttatcgggtgagcatggattaacggtcgaggccttggcggacaaactggggatc
agcagccgttatctaaataagttatttacctctggatttggcacttcgcctaagcaattt
gcactctatcgtcagttaatgttcgcaaaacagttgttgcatcagacgcagctgcccatc
actcaggttgcgcttgccgcaggctttaacagtattcgccgtttcaacgaggcatttcaa
cagactctgcaattaacgcccacacagttaagaaaatccagtctgaagtcgactgccaag
ttagaggaaggggagagaactaataaggctagtccgcagcagatgccagcgcacagtttg
agtttatatcagtattaccgaccgccgctcgattggccggcgcagttagccttttatcgc
ctgcgcgccgtggcgggaatggagtggttttgtgaggggggaaatcatgactccaatgac
atgatgtcccaagatacacttgagtatggtcgcaccttgcaacttgaggatatccgcgca
gtggtgcgtatcgcccatgaggcacatttgcatcgctttaaaatcacgctgacattaacg
cccgactcgcccttggcgggcctacaaaaactcatcacccaagtgcggcgcattttagat
ctcgatgccgatatgcagctgattgagcataagctacagcgtttgaccgatcttaagtta
atccctaaatcaggtcttaggatcccgggagcaggatctttatttgaggcgggttgccga
gccgttttaggtcagcaggtgagcgtagtgcaggccactaagttactcaatttattggtc
gaagcctatggcgaacgttttagcttaaacgggcaagagtatcgcttgttccctacaccg
cagctgatccgtcatgcctgcctcgatgagcttaaaatgcctggtgcgcgcaaactggcg
ctcaatgcgcttgcggcgtttatctgtgagcacccagaagccacagccgatgagtggatt
ggggtaaaaggcattggcccctggaccattgcctatgccaaattacgtgggcttggcgat
ccaaatatcttcctgcacacggatttaattgtgaaaaagcaattactggcgacgatgggt
gagcagacagggttagatactgaagcgcaaaaacaactggattattcagcgattgttgag
cgggtaagtgcagatatcgccccttgggggagttatttgaccttcctgctgtggtccaat
gcatag
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