Shewanella xiamenensis: MKD32_08355
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Entry
MKD32_08355 CDS
T08228
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
MKD32_08355 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxm03400
]
MKD32_08355 (sbcB)
Enzymes [BR:
sxm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
MKD32_08355 (sbcB)
DNA repair and recombination proteins [BR:
sxm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
MKD32_08355 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MKD32_08355 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MKD32_08355 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Aminotran_1_2
Motif
Other DBs
NCBI-ProteinID:
UML95289
LinkDB
All DBs
Position
complement(1885636..1887048)
Genome browser
AA seq
470 aa
AA seq
DB search
MYTASQPSIFWHDYETFGANPAQDRPAQFAGVRTDLDLNIIGEPETFYCKQSTDYLPSPE
AILITGITPQLANLKGLPETEFMGRIHTLFSQPNTCVAGYNSLRFDDEVTRYGFYRNFID
PYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHD
AMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMLPLAHVSSKISAMHGC
TTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQV
HLNKCPFITSAKILDDVQAERLNIDKAFAREQYKRLKSHPELREKLAQLFEHDGEVTTTD
PDLMLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLDD
QESHRWRTFCQQRLADQDYLLKLENLLQDTEDDEHKQKLLAALCHYLRGL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtatacagcatctcagccaagtattttttggcacgactatgaaacattcggtgccaac
ccagcccaagatagacccgcccaatttgccggggtccgtaccgatttagatcttaacatt
atcggtgagccagagactttttactgcaaacaatcaacggattacctgccctcacccgaa
gcgattttaattacagggatcacgccacaattagccaatttaaaaggcttacctgaaacc
gagtttatggggcgtatccatactctcttcagccaacctaatacctgtgtcgctggctat
aactcgttacgatttgacgatgaagtcacccgctatggcttttaccgtaactttatcgat
ccctatgcccgcgaatggcaaaatggcaatacgcgttgggatatcattgatttagtgagg
gcctgttatgcctttagacccgacggtatccattggccattaaaagaagacggttcaccc
agttttaaactggaacatctgacccaagctaatggtttaagccatgaaaaagcgcacgat
gccatgtcagatgtttacgccaccatcgcaatggcaaaactgataaaagaaaagcaacct
aagttataccagtactattttgaattgcgccgtaaacaagccgtcagcgcgcaaattgac
gtattaaatatgctaccgcttgcccatgtcagttcgaagataagtgcaatgcacggttgt
acaacccttatcgcccccgttgcacaccacccaagtaacaaaaatgccattatttgcgtg
aatttagcgatggatttaagcccactgtttgagctggatgtcgagcagataaaaacgcgc
atgtacacgccaagagcggagcttgccgaggatgagttacccatcccagttaaacaggtg
catcttaacaaatgcccttttattacttcggccaaaattttagatgatgtgcaggcagaa
agactcaacattgataaagcctttgccagagaacaatacaaacgcttaaagtctcacccg
gaattacgggagaagctggcgcaactgtttgagcatgacggcgaagtaaccaccacggat
cctgacttaatgttgtattcgggtggatttttcagccctgccgataaagccaagatggag
atcattcgccataccttacctcaaaatttagccgcacttgatttgcaatttgatgatgga
cgcatcccagaaatgctattccgttatcgggcgcgcaattatcccgaattacttgatgat
caagaatcccatcgctggcgcaccttctgtcagcagcgtttggccgatcaggattatctg
ctcaaacttgagaatttgttgcaagataccgaagacgatgagcataaacaaaaactactc
gccgccctgtgccactatttgcgtggattgtaa
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