KEGG   Shewanella xiamenensis: MKD32_08355
Entry
MKD32_08355       CDS       T08228                                 
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
sxm  Shewanella xiamenensis
Pathway
sxm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sxm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    MKD32_08355 (sbcB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sxm03400]
    MKD32_08355 (sbcB)
Enzymes [BR:sxm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     MKD32_08355 (sbcB)
DNA repair and recombination proteins [BR:sxm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     MKD32_08355 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     MKD32_08355 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      MKD32_08355 (sbcB)
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T Aminotran_1_2
Other DBs
NCBI-ProteinID: UML95289
LinkDB
Position
complement(1885636..1887048)
AA seq 470 aa
MYTASQPSIFWHDYETFGANPAQDRPAQFAGVRTDLDLNIIGEPETFYCKQSTDYLPSPE
AILITGITPQLANLKGLPETEFMGRIHTLFSQPNTCVAGYNSLRFDDEVTRYGFYRNFID
PYAREWQNGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHD
AMSDVYATIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMLPLAHVSSKISAMHGC
TTLIAPVAHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQV
HLNKCPFITSAKILDDVQAERLNIDKAFAREQYKRLKSHPELREKLAQLFEHDGEVTTTD
PDLMLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLDD
QESHRWRTFCQQRLADQDYLLKLENLLQDTEDDEHKQKLLAALCHYLRGL
NT seq 1413 nt   +upstreamnt  +downstreamnt
atgtatacagcatctcagccaagtattttttggcacgactatgaaacattcggtgccaac
ccagcccaagatagacccgcccaatttgccggggtccgtaccgatttagatcttaacatt
atcggtgagccagagactttttactgcaaacaatcaacggattacctgccctcacccgaa
gcgattttaattacagggatcacgccacaattagccaatttaaaaggcttacctgaaacc
gagtttatggggcgtatccatactctcttcagccaacctaatacctgtgtcgctggctat
aactcgttacgatttgacgatgaagtcacccgctatggcttttaccgtaactttatcgat
ccctatgcccgcgaatggcaaaatggcaatacgcgttgggatatcattgatttagtgagg
gcctgttatgcctttagacccgacggtatccattggccattaaaagaagacggttcaccc
agttttaaactggaacatctgacccaagctaatggtttaagccatgaaaaagcgcacgat
gccatgtcagatgtttacgccaccatcgcaatggcaaaactgataaaagaaaagcaacct
aagttataccagtactattttgaattgcgccgtaaacaagccgtcagcgcgcaaattgac
gtattaaatatgctaccgcttgcccatgtcagttcgaagataagtgcaatgcacggttgt
acaacccttatcgcccccgttgcacaccacccaagtaacaaaaatgccattatttgcgtg
aatttagcgatggatttaagcccactgtttgagctggatgtcgagcagataaaaacgcgc
atgtacacgccaagagcggagcttgccgaggatgagttacccatcccagttaaacaggtg
catcttaacaaatgcccttttattacttcggccaaaattttagatgatgtgcaggcagaa
agactcaacattgataaagcctttgccagagaacaatacaaacgcttaaagtctcacccg
gaattacgggagaagctggcgcaactgtttgagcatgacggcgaagtaaccaccacggat
cctgacttaatgttgtattcgggtggatttttcagccctgccgataaagccaagatggag
atcattcgccataccttacctcaaaatttagccgcacttgatttgcaatttgatgatgga
cgcatcccagaaatgctattccgttatcgggcgcgcaattatcccgaattacttgatgat
caagaatcccatcgctggcgcaccttctgtcagcagcgtttggccgatcaggattatctg
ctcaaacttgagaatttgttgcaagataccgaagacgatgagcataaacaaaaactactc
gccgccctgtgccactatttgcgtggattgtaa

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