Shewanella xiamenensis: MKD32_09410
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Entry
MKD32_09410 CDS
T08228
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MKD32_09410 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxm03400
]
MKD32_09410 (uvrB)
DNA repair and recombination proteins [BR:
sxm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MKD32_09410 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MKD32_09410 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
UVR
ResIII
DEAD
AAA_30
AAA_22
DUF2963
Kinesin
Ish1
Motif
Other DBs
NCBI-ProteinID:
UML95483
LinkDB
All DBs
Position
2135745..2137766
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AA seq
673 aa
AA seq
DB search
MSESVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRP
TIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHI
EQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSEL
QYTRNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIIKRIA
RTTVYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVE
LGYCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKT
TLVEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELEKSGGEIVEQVVRPTGLL
DPELEVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSD
IDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTI
GRAARNVNGKVILYADRITNSMAKAMGETERRREKQRAYNLEHGIVPKGVVKRITDVMDV
DDGRDTEKGYSPSSLGKVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALR
DEVKRLRELLISA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagaatctgtttttcagcttgaatcccaatttgcccccgcaggtgaccagccaaca
gccattgctaaattggttgatggcctcgaatcaggccttgcttgccaaaccctattaggg
gtgacgggctctggtaagacgttcaccatcgccaatgtgattgctaagcttgggcgaccg
accattattatggcgccaaataagactctcgccgcacagttatatggtgagatgaaagag
tttttccccaataatgcggtggaatattttgtctcctattacgattactatcagcccgag
gcgtatgtccccgcatccaatacctttatagaaaaagatgcctcggtaaacgcccatatt
gaacaaatgcggctctcggccactaaagccctgctggaacgcaaggatgtggtgctgatt
gcctcggtatcggcgatttatggtcttggcgatcctgactcttacctcaagatgctattg
cacctgcgccagggcgataccatgggacagcgggacattcttaagcgattgagtgaattg
caatacacccgtaatgatatcgagttgcagcgcggcacctttcgtgttcgcggcgaagtg
attgatatttttcctgccgactcagatcgctacgcgattcgggtggaactatttgacgat
gaaattgaacgcttaagcgagtttgatccgttaactgggcagattatcaaacgtatcgct
cgcaccacagtgtaccctaagacccactatgtgacgccgcgggaaaagatcctagaagcc
accgagctgattaaacaagagctgcgtgagcgcaagcaatatctgctcgacaataataag
ttgattgaggcgcagcgcatccacgagcgtgtgcaatacgacattgaaatgatggtggag
ctaggctattgctccggcattgaaaactactcccgctatttatcaggacgcgcccccggt
gaggggccgccaacgctgctcgattacttacccgctgatggtttattggtgatcgacgaa
tcccatgtcaccgtgccacaaattggtgccatgtataagggtgaccgttcccgtaaaacc
accttggtggaatatggctttcgtttgccctcggcgctggataaccggccgctgaagttt
gaagagtttgagcagttaatgccgcagacgatttatgtgtcggcgacgccaaacccctat
gaattggagaagagtggcggcgagattgttgaacaagttgtgcggcctacaggattgctc
gatcctgagcttgaggtgcgccccgtcggcattcaagtggacgatttgctctcggaagtc
gctaaacgggttgcggtaaacgagcgggtgttagtcaccacgttaactaaacgtatgtcg
gaggatttaactgaatacctcgacgaacatggtgtcaaagtccgctacttacactctgat
atcgataccgtagagcgggtagagatcattcgcgatttgcgcctcggtaagtttgatgtg
ctggtcggcatcaacttgctgcgcgaaggcttagatatgccggaagtctcactcgtctgt
attttggatgcagataaggaaggttttttacgttcggagcgttcgctgatccagaccatt
ggtcgcgccgcgcgtaacgttaatggtaaggtgatcctctatgccgatcgcatcaccaac
tcgatggcaaaggcgatgggcgaaaccgagcgccgccgtgagaaacagcgagcctacaac
cttgagcatggcattgtgccaaaaggcgtggtcaagcgtattaccgatgtgatggatgtg
gacgatggcagagacactgaaaagggctatagcccatcgtcactgggtaaagtggctgaa
cctaaagccaaacgttatcatgcagatgctgcccagctgagccatgatatcgataagctc
gagaagcaaatgcatgaacatgcgcgtaacttggagtttgaacaggcggcggccttgcgt
gatgaggtgaaacgcttaagggaattactgatcagcgcataa
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