Shewanella xiamenensis: MKD32_09970
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Entry
MKD32_09970 CDS
T08228
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKD32_09970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxm03019
]
MKD32_09970
03400 DNA repair and recombination proteins [BR:
sxm03400
]
MKD32_09970
Enzymes [BR:
sxm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MKD32_09970
Messenger RNA biogenesis [BR:
sxm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MKD32_09970
DNA repair and recombination proteins [BR:
sxm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MKD32_09970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SWI2_SNF2
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UML95586
LinkDB
All DBs
Position
2274610..2276577
Genome browser
AA seq
655 aa
AA seq
DB search
MSYSAPQPDDVPTLIPLLQQQFGFAGFRQGQGEVISQLLAGQSSLAIFPTGSGKSLCYQF
TALQLPHLTLVVSPLLALIKDQLSFLQQKGIKAASIDSTLTPEMTQQVMREARSGELKLL
MVSVERFKNERFRQFIQSIPISMLVVDEAHCISEWGHNFRPDYLKLPDYRRELAIPLVLL
LTATATRKVKLDMAARFDIKPQHIVQTGFYRANLDLTVLPVASQHKLAALQQQLQHVIGA
GIVYVTLQHTAEEVAAELCRMGFEASAYHAGFEDEKRQQIQQDFMQGHINIVVATIAFGM
GIDKSNIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHCVTLANLDGINTVENFVYGDTPE
LASIKAVINNIREETHNGRWELQLHQLSTVSNIRQLPLKTLLVQLEMQGIIKPLYAYYAD
IRYRFIVPQEQFLHQFSPERQAFLTDIFAHTQMKRIWGSLDFSSLYQATGAERTRVMAAL
EYLASQQLIELEAKQVTDVYQVDEQGLVQENRAEQLYQYFADKEVKEIARIAQLVRFFEL
TTCLNYNLARYFDDNAAPQSCGHCSVCRGQVAKLTYSEELIWPDDTQICADLNELKLAAE
AKGLAPLSLDTQCQFLAGLTQPILTRLQARKLQGFGRLEKCRYADIKQKLQKAGT
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtcttattcagcacctcagccagatgatgtaccaactttgataccactattacagcaa
caatttggctttgcaggatttagacagggtcaaggtgaggttatctctcagctattagct
ggccagtcgagcctggcgatttttcctactggctcaggaaaatcgctctgctatcaattt
accgcgctacaacttccacatttaaccttagtggtttcgccattgttggctttgattaaa
gatcaattaagttttttacaacagaagggcattaaagcggcgagtattgattcgacctta
acaccagaaatgactcaacaggtgatgcgtgaggctcgctcaggcgagttaaaattgcta
atggtttcggtggagcgatttaaaaatgagcgatttaggcaatttattcaatcaattccg
atctctatgctagttgttgatgaagcgcactgtatctcagaatggggacataattttcgc
cccgattatttaaaactccccgattatcggcgcgaattagcgattccattggtgctgtta
ctcacggccactgcaacacgtaaagtaaagctagatatggcggcgcgttttgatattaag
ccacaacacattgttcaaacaggcttttatcgtgctaacctcgacttgacagtactacct
gtagcaagtcaacacaagttggccgcactacaacagcagttacaacatgttatcggtgca
ggaattgtctatgtgactttgcagcatacagcagaggaggtggccgctgaactttgccgt
atgggatttgaagcaagcgcctatcatgctgggtttgaggatgagaaacgccagcaaatt
cagcaggactttatgcagggccatatcaacatcgttgttgcgaccatcgcctttggaatg
gggattgataaaagcaatattcgttttgtgatccactatgacttaccaaaatctattgaa
aattactgccaagaaattggccgcgcagggcgtgatggacaactttcccattgcgtcact
ttagccaatttggatgggatcaacactgtcgaaaactttgtttatggcgatacgcctgaa
ctggcaagtattaaggctgtaattaataacattcgcgaagaaacccacaatggacgttgg
gaactgcaacttcatcaactgtcaactgtgagtaatattagacaactccctctgaaaacg
ttactcgtgcagcttgaaatgcaaggcatcatcaaaccactttatgcctattacgccgat
attcgttaccgttttattgtgccgcaagagcaatttttgcatcagttttcacccgaacgg
caggcatttttaactgatattttcgcccacacccaaatgaagcgcatttggggcagtttg
gatttttcttcactgtatcaggctacgggggctgaacggactagagtaatggctgcgtta
gaatatcttgcgagtcagcaactcattgaattagaagcaaagcaagtcaccgatgtctat
caagtcgatgaacaaggcttagtacaggaaaaccgagcagagcagctctatcaatacttt
gctgataaagaagtaaaagaaattgctcgcattgcacagttagtacgattttttgagcta
acgacttgcttaaattacaatttagctcgctattttgacgataatgcagcaccccaatcc
tgtggtcattgcagtgtttgtcgtggccaagtggctaaattgacctattctgaagagcta
atatggcctgatgatacgcaaatttgtgccgatttaaacgagttaaaactcgcagcagaa
gccaaaggcttagcacctttgtccttagatacccaatgccagtttttagcaggcctgact
caacccattttgactcgtttgcaagctcgcaaactccagggcttcggacgtttggaaaaa
tgtagatacgccgatatcaagcaaaagctacaaaaagcgggtacttaa
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