Shewanella xiamenensis: MKD32_13645
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Entry
MKD32_13645 CDS
T08228
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03030
DNA replication
sxm03430
Mismatch repair
sxm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MKD32_13645 (dnaE)
03430 Mismatch repair
MKD32_13645 (dnaE)
03440 Homologous recombination
MKD32_13645 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sxm03032
]
MKD32_13645 (dnaE)
03400 DNA repair and recombination proteins [BR:
sxm03400
]
MKD32_13645 (dnaE)
Enzymes [BR:
sxm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MKD32_13645 (dnaE)
DNA replication proteins [BR:
sxm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MKD32_13645 (dnaE)
DNA repair and recombination proteins [BR:
sxm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MKD32_13645 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UML92481
LinkDB
All DBs
Position
complement(3074982..3078461)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAHGMAAVALTDQNNFCGLVKFYGGCHGA
GIKPIIGADFWMQVPGFEGEFCALTIIAMNNEGYQNLTQIISQAYLRGHVQGRVVIDQEW
LVTYNQGILLLSGGKEGDVGKALLKGNNTQVESLCEFYQQHFEGRYFLELLRTGRPDEER
YLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALANTVEIAKRCNVTIRLNEYFLPNFPTGDMSIEDYLVDRSKKGL
EERLAFLFPDPQVRAERRGEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIEHVSD
MYGRDAVSQIITFGSMAAKAVVRDVGRVLGHAYGFVDRISKLIPPDPGMTLAKAFEAEPK
LPELYEQDEEVKDLIDMARRLEGVVRNAGKHAGGVVIAPTRITDFAPLYCDDSGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKEGKPPVDIAAIPIHDKKSFDLL
QRFETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFVDLFDFCARIDLKKLNKRVIEKLICAGALDSLGPHRASMMAT
LPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFAS
ALEIDLEASQLTPNMLEGIEQAISPWRNGAVPVLINYSQAQAKGQFRLAETWRVNPSDEL
VFALESLLGPNKVRIVFPS
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatctgcgtgtccacagtgacttttctatgtccgatggt
gtggctaaggtcaagccaatccttgctcaagttgaagcgcatgggatggcggcggtggct
ttaacagatcaaaataacttctgtggtctagtgaagttttacggcggttgccatggcgca
gggatcaagccgattattggcgcggacttttggatgcaagtgccaggttttgagggtgag
ttttgcgccttaaccattattgcgatgaataatgagggctatcaaaacctcacccaaatc
atcagccaagcctatttacgcgggcatgttcaaggtcgcgtagtgattgaccaagagtgg
ttggtcacatataaccaaggcattttgctgctatctgggggcaaagaaggggatgtgggt
aaggcgctgctgaagggcaacaatactcaggttgagtcgttatgcgagttctatcagcag
cattttgagggacgttatttccttgagttgttacgcacgggacgccccgatgaagagcgt
tatctgcacatggcggtgggattagcgcaggaaaagggaattccggtggtggccactaac
caagtggtgtttttaaagccagaggacttcgaagcccatgaaatccgcgtcgcgattcac
gatggttttacgctcgccgatccacgccgtcctaaaaagtacagtgagcagcagtacctt
cgtagtgaagaggaaatgtgtgaactgtttgctgacatccccgcagcccttgccaatacc
gttgaaattgctaagcgttgtaacgtcactattcgtttaaacgaatacttcttacctaac
ttccccaccggcgatatgtcgattgaggattatttggttgatcgctctaagaaggggctc
gaagagcgcctagccttcttatttcccgacccacaagtgcgtgccgagcgtcgcggtgag
tacgatgagcgcctcgacatcgagcttcaagtgattaaccaaatgggcttcccgggttac
ttcctcatagtgatggagtttatccagtggtccaaggacaacggcatccccgttggcccg
ggccggggctcgggggcgggttcactggtggcttacgcgctcaagatcaccgacctcgac
ccgcttgaattcgacctgctgttcgaacgcttcctgaacccggagcgggtatccatgccc
gacttcgacgtcgacttctgcatggacagacgggacgaggtgatcgagcacgtctccgac
atgtatggccgggatgcggtgtcccagatcatcaccttcggcagcatggcggccaaggcg
gtggtacgggacgtgggccgggtgctgggccacgcctatggtttcgtcgatcgcatctcc
aagctgatcccgcctgatccgggcatgaccctggccaaggcattcgaggccgagcccaag
ctgcccgagctttatgagcaggacgaggaggtcaaagacctcatcgacatggcgcgccgg
ctggaaggcgtggtgcgcaacgccggcaaacacgcaggtggcgtggtcatagcgcccacc
aggatcaccgactttgcgccgctttactgcgacgattccggcaatcaccctgtcacccag
tttgacaagaacgatgtggaatacgccgggctggtgaagttcgacttcctggggctgcgt
accctgaccatcatcgactgggcgctcggcatgataaacccgcgccttgccaaagagggc
aagccgccggtcgacatcgccgccatccccatccacgacaagaagtcgttcgatctgttg
cagcggttcgagaccacggcggtattccagctcgaatcccgcggcatgaaggatctcatc
aaacggctgcagcctgactgtttcgaagacatgatcgccctggtggccctgttccgtccg
ggcccgttgcaatcgggcatggtggacaacttcatcgagcgaaagcatggccgtgaagag
gtgtcttaccccgattctcaataccagcatgaatccttaaaagaactgctttcgcccacc
tacggcattattttgtaccaagagcaggtgatgcagattgcgcaggtattgtctggttat
accttgggcggcgctgacatgttacgccgtgctatgggtaagaaaaagcctgaggagatg
gccaaacagcggagtattttcaaagagggcgcaattaaaaacggtgtcgacggcgagctg
tcgatgaaaatcttcgaccttgtggaaaagttcgctggttacggttttaacaagtctcac
tctgcggcctatgcgttagtttcctatcaaacgctgtggttgaagacccattttccatcg
caatttatggcggctgtaatgtctgccgatatggataacaccgataaaattgtgacctta
gtggatgaatgcgagcggatggggctcaccatcattccgccggatgtgaataagggatta
tttaagtttaccgttgatgatgatctgcggattgtctacggcattggtgcgatcaaaggc
gtgggtgaggggccagttgagtcaattttagaggcgcgtaaagatggtccctttgttgat
ttattcgatttctgtgcccgtatcgacctaaaaaagctcaataaacgggttattgaaaag
cttatctgtgcgggagcgttagattccctcggaccgcaccgcgcgtcgatgatggcaacc
ttacccgaggccattagcgcagcagaccaacatgccaaggctgaggctattggccagcat
gatatgtttggtttgcttaatagcgatcccgaggatagcaagcaacagtttgtggaatgt
accccatggccggacaaaatttggcttgagggcgagcgcgaaacattagggttgtattta
actgggcacccaataaatcaataccttaaagagcttaagcattacacctctgggcgctta
aaggatgtgcaccctaccgaacgtggcaaaaccgtcaaggctgcgggcctcgtcgtggcg
acccgggtgatgctcactaaacgcggctcgaaaatgggcttactgaccttagatgataag
agcgctcggcttgaggtgatgctatttactgaagcctttgagaagtttaatcacctgctg
gaaaaggaccggatcctgatctgcgaaggtgaggtgagttttgatgattttgccggtgga
aaccggatgacggcgcgcaatatcatcgatatcagtgaggcgcgtagccattttgccagt
gcattggaaatcgatttagaggcatcgcagctgaccccaaatatgctcgagggcattgag
caggcaatcagtccatggcgtaatggcgcagtgccagtgctgattaactacagccaagct
caagccaaggggcagtttagattggccgaaacctggcgagttaacccaagtgatgagttg
gtctttgccttggaaagtttactcggcccgaacaaagtgcggattgtatttccatcgtaa
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