Shewanella xiamenensis: MKD32_14235
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Entry
MKD32_14235 CDS
T08228
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKD32_14235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxm03019
]
MKD32_14235
Enzymes [BR:
sxm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MKD32_14235
Messenger RNA biogenesis [BR:
sxm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MKD32_14235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UML92592
LinkDB
All DBs
Position
complement(3227134..3228504)
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AA seq
456 aa
AA seq
DB search
MKFDTLGLSSPILNAITECGYQQLTQVQQQVIPLALTGKDIMACAQTGTGKTASFALPVL
EQLAAQPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVE
QGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPIHQT
MLFSATYSDAVKQLSHKMLNQPEWVNVAENTTASTVEQLVYRVDKRRKAELLSELVGRNN
WRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVATDV
AARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEALI
GQQLPVTVQPGYEEGTPLPARYRDAPAATTKTKWSYKAPKDRTIGKVSAAGKSSEIQARS
RKSPTREGKYSKDKAKFSPFQTQRSGGKPQGGNKVK
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgacacactcggcttatcttcacctattttgaatgcgataactgagtgtggc
tatcagcaactcactcaagtgcaacaacaggttattcctctcgccttaacggggaaggat
attatggcctgtgctcagactggaacaggtaaaaccgcttccttcgccttgcccgtgctt
gagcaacttgctgcccagcctgccgataaacccttgctgcgcgccttagtgatgacgcca
acccgtgagttggcaattcaagtttgtgcgaatattcaaaaatatagccagtttttgccc
cttaaaaccttagcggtttatggcggtgcgaatatgaatccgcagcgtaaaggcgtcgag
cagggcgtcgatatcctcgtcgcaacgccagggcgactattcgatattattggccagttc
aatttagacctgtccagtgtaacgaccttagtgatcgacgaagcggatcgtatgctcgat
ttaggctttgtacgcgacattgaaaaggtgaagcgccttattgccccaatacatcaaacg
atgttgttttcagccacctatagcgatgcggtgaagcaactctcccataagatgctcaat
caacctgaatgggttaatgttgccgaaaataccacggcatcgaccgtagaacagttagtg
tatcgggtcgataagcgccgcaaagcagagttattatctgagctggtggggcgcaacaat
tggcgccaagtgttggtgttcgccagtactaaggaatgcgctgagcatttattgcaggag
ttaacactcgatgggatcagcgcgggcgtgtttcatggggataaaacccaaggggcgcgt
aatcgtgtgctcgatgattttaaagccggaaaactgcgcgtgttggtggcaaccgatgtg
gcggcccgcgggcttgatattcaggcgctgcccttagtgataaacctagagttgcctttc
ctcgcggaagattatgtccatcgtattggccgcactggccgtgcgggcctgtcaggtcga
gcgatttcatttgtcagcccagcagatgatgaaatgctcgcagaaattgaagctttaatt
ggtcagcaactccctgtcaccgtgcagcctggttacgaggagggcacgccactgcctgca
cgttaccgcgatgctcccgcggcaaccactaaaactaaatggagttataaagcaccaaaa
gatcgcactattggcaaagtcagtgctgctggaaagtcgagtgagatccaagctagatca
agaaaatctcctacccgcgagggtaagtattcaaaagataaggcgaaatttagcccattt
caaactcagcgttctggtggtaagccgcagggcggcaataaagtaaaatag
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