Shewanella xiamenensis: MKD32_14660
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Entry
MKD32_14660 CDS
T08228
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKD32_14660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxm03019
]
MKD32_14660
Enzymes [BR:
sxm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MKD32_14660
Messenger RNA biogenesis [BR:
sxm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MKD32_14660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
P-loop_SecA
AAA_19
UTP25_NTPase-like
AroM
SecA_DEAD
AAA_22
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
UML92672
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All DBs
Position
3335477..3336778
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AA seq
433 aa
AA seq
DB search
MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL
QKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQK
LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR
QNLLFSATFSSAVKKLANEMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG
KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA
TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE
KLIGQKIRRITVPGYEVGSRELLLKQLQTRRSFAKKQQRLDNVSEQIIAEKSMQGRRVKM
KVGQAPSKGKKLK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagatttgaatcttttagtttttgccccgagattttacgcgctatctcagattgcggt
tatcaaaaaatgacaccgattcagcagcaagcgatcccagccatccgccgcggccaagat
gtgctcgccagcgcgcaaaccggcactggtaaaaccgccgccttcgcactgccgatccta
caaaaaatggttgaaaacccaagtgaaaccttaaaatctaacacgcgggtattaatcctc
actccgactcgcgaacttgccgcccaagtagcagaaaacgttgaagcctacagcaagtat
ttaaatttcagcgtattaacgatctacggtggcgtaaaagttgagactcaagcccaaaag
ttaaaacgcggtgccgatattattgtcgcgaccccaggccgtttacttgagcaccttacc
gcctgtaacttaagtctgtctagcgttgactttttagtgctcgatgaagccgatcgcatg
ctagatatgggctttagtgccgacattcaaaaaattcttcaagcagtcaacaagaagcgt
caaaacctactgttttcagccaccttctccagcgcagtgaaaaaactggctaacgagatg
atggtcaaaccccaagtgatcagcgcagataaacaaaacacgacagccgataccgttagc
caagtggtgtatccggtagagcagcgtcgtaaacgcgagctattatcggagttgattggt
aagaaaaactggcaacaagtgttagtgtttaccgcgacccgcgatgcagcggatactctg
gttaaagaattaaatttagatggtattccctctgaagtcgtccacggtgaaaaagcccaa
ggtagccgtcgccgtgcgctgcgcgaatttgtatccggtaaagtacgtgtgctagtggca
accgaagtggccgcccgcggtttagatattcccagccttgagtatgtggtcaacttcgac
ttacctttccttgccgaagactatgttcaccgtatcggccgtactggccgagcaggtaaa
tcaggggttgcgatttcatttgtgagccgtgaagaagagcgcaccctcgcggatattgaa
aagctaatcggccaaaaaattcgccgcattaccgtaccaggatatgaggtcggtagccgt
gagttgttgttaaaacagctgcaaacccgtcgcagttttgccaaaaaacaacagcgactc
gacaacgtcagcgagcagatcatcgccgaaaaaagcatgcagggccgccgcgtgaaaatg
aaagttggtcaagccccaagcaaaggcaaaaaactcaaataa
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