Shewanella xiamenensis: MKD32_16440
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Entry
MKD32_16440 CDS
T08228
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm00630
Glyoxylate and dicarboxylate metabolism
sxm00680
Methane metabolism
sxm01100
Metabolic pathways
sxm01120
Microbial metabolism in diverse environments
sxm01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
MKD32_16440 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
MKD32_16440 (fdhF)
Enzymes [BR:
sxm01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
MKD32_16440 (fdhF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Pyr_redox_2
Molydop_binding
Fer4_20
Molybdop_Fe4S4
Pyr_redox
Pyr_redox_3
Fer2_4
NAD_binding_8
Fer4_7
Fer4
DAO
HI0933_like
Fer4_6
Thi4
Amino_oxidase
Fer4_8
NAD_binding_7
GIDA
FAD_oxidored
Fer4_9
Fer4_18
Fer4_10
Fer4_2
FAD_binding_2
FAD_binding_3
Fer4_22
Fer4_16
AlaDh_PNT_C
Fer4_21
MurD-like_N
Shikimate_DH
Lys_Orn_oxgnase
NADH-G_4Fe-4S_3
Fer4_17
Fer4_15
Motif
Other DBs
NCBI-ProteinID:
UML92997
LinkDB
All DBs
Position
3732872..3737155
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AA seq
1427 aa
AA seq
DB search
MIELRIDNQIVSAEPSDNLLHAARKAGIAIPSLCDPTDASRQLDTQAHAEKQDCNLCLVQ
IENSDASLRCVKACETPAQTGMKVITQSAFLTKQRQAALNTILSDHFADCEAPCQQACPA
GVDVQSYLYHIAQGDHTQAIKVIKDTLPLPLSIGRVCPAFCETECRRGLVDDPIAIRQLK
RHAADLDLADDEHGNSYQPPRLADTDKKIAIIGAGPAGLSAGYYLSNQGHNVEIFEAMPK
AGGWLRYGIPEYRLPKAILDKEIELLCRNGLIIHTQTRLGHEVHLAQLVTDFDAVCLAIG
AQKAVPMNYKGSELAGCYLGVDFLKDHCLDKQLKLGKKVAVIGGGNTAIDCARTAVREGC
DVTLIYRRTRAEMPAEAYEVHEAEVEGVKFHFLTNPIENHSDANGHVQSVTFSKMALGEA
DASGRRAPVDTGETFTEAFDTVIAAVSQAPDLSFMQDPMGQLSHGELALSRWNTLIGCEQ
TMSSGVEKLFVMGDARRGPATAVAAIGDGRKAAKAIDKMLQIGLSCDLHAHDFNSVKTIP
SGLKQAKTTSEAASTLYPHTPRQPRLKMPELTALQRLLNYSEVELGFPADAAMQEAARCL
ECACQANTDCKLRDYATDYGVESKSLATENARHFSVDKSSPFIQFDANRCISCGKCVDVC
QQQSGHCAIQFTEDSYQALPQEISQSHVRRAPRVGFSASMADSRCVQCGNCVQVCPTGAL
VDARDKRQGDKTALKTASTICTYCGVGCRLDLKIDPNTNRIRHIEGNKDSVVNQGMLCVK
GRFGFDFIHSDKRLTTPLIRKNSELQPCSWPEAIAYVAKRLTEIKQQDGSNAIASLASAK
ATNEDNFVLQKFVRSVLGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDIPSIKDSDVIF
IIGSDTTCAHPIIASKIQQAVMQHGARLIVADPKRVGIAEKAELYVAHRPGTDVMLLNAI
MAEIIRNNWQDKDYIAERTEGIEALYAELAKKDYSLENAALITGVKAEDIARIARTIGTA
QKTAVYYAMGITQHTTGHDNVTAISNLQLLCGNIGVSGAGINPLRGQSNVQGACDMGALP
NYFTGYQKVTDIHARMRFENHWQTPLSGEIGVTATHMMHDIAKGKIKALYVMGENPVLSD
PDQAHVLNALSQIEFLVVQDIFLTETAELAHVVLPAAAFVEKRGHFTNTERRVQRLEQAL
ASPGEALPDWQIVQALANAMGANWDYKDEEAIWAEINVLTPQYRGIRWERLTISAEGKVP
QGIQWPCPDENHPGTPIMHQSQFTRGLGLFTPVSYRLPAEMPCNEYPLTLSTGRLLEQFH
TGTLTRKTPGLDLLGAPKVMISVYDAEQLGINNGDRISLITRRGEIEIDAFVTKRAQAGV
LFLPFHFVEAAANKLTINALDPVAYIPEYKVCAVRVEKVTKRVIEPA
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacttcgaatcgataatcagatagtctcggccgagccgagcgataacctatta
cacgcagcccgtaaggcgggtattgctattcccagcctgtgcgatcccactgacgcctca
cggcaattggacacgcaagcccatgccgaaaagcaggactgtaacctctgtctggtgcaa
atcgaaaatagcgatgccagtctgcgctgcgttaaagcctgtgaaaccccagctcaaaca
ggcatgaaggtcatcacccaatcggcgtttttaaccaaacagcgccaagcggcactgaac
accatcttgagtgatcactttgccgattgtgaagcgccctgccaacaggcctgccctgcg
ggggtcgatgtacaaagttatctctaccacattgcccaaggtgaccacacccaagcgatt
aaagtcattaaagacactctgccactgccgctgtcgattggccgagtctgccccgcgttt
tgcgaaaccgaatgccgccgcggcctcgtcgacgaccctattgccatccgccaacttaag
cgccacgctgccgatttagatttagccgatgacgagcacggcaatagctatcaaccgcca
cgcctcgcagacacggataagaaaattgccattataggcgcaggtcctgcgggcttaagt
gcgggttattatctttcgaatcaagggcataatgtcgagatatttgaagccatgcccaag
gcgggcggttggctgcgctacggtattcccgaataccgtttacccaaggcgattctcgat
aaagaaatcgagctgctgtgtcgtaatgggttaatcattcatacccagactcgcctcggc
catgaggttcacttagcccagttggtcaccgacttcgatgcggtgtgccttgcgatcggc
gcccaaaaagcagtgccgatgaattataaaggctcggagctggcgggctgctatctaggg
gtagattttcttaaggatcattgcctcgataagcaattgaagttgggtaaaaaagtcgca
gtcatcggcggcggcaataccgccatcgattgtgctcgtacagcggtacgtgaaggctgc
gatgttactttaatctaccgccgtacccgcgccgaaatgcccgccgaagcttacgaagta
cacgaggccgaagtcgaaggagtaaaattccacttcttaaccaatcccattgaaaatcat
agtgatgccaatggacatgtacagtcggtcaccttcagcaaaatggcgctcggcgaagcc
gatgcttcaggcagacgcgcccccgtggacacaggggaaacctttaccgaagccttcgat
accgttatcgccgccgtctcgcaggcaccagacctgagctttatgcaagatcccatgggg
caactcagccatggcgagctggcactcagtcgctggaacaccctcattggttgtgagcaa
accatgtcatcgggtgtggaaaaactgtttgtgatgggcgatgcccgccgcggcccagcc
accgcggttgcagcaattggtgatggccgaaaagcggcaaaagccattgataaaatgctt
caaattggccttagctgtgatttacatgcccacgattttaactcggtaaaaaccattccg
agcggccttaagcaagcaaaaacaacatcagaagccgcatcaacgctttatccccatacg
ccacgtcagccccgcttgaaaatgcccgaattaacagcactacaacggctgctgaattac
agtgaagtcgaattgggctttcccgcagatgccgctatgcaagaggcggcgcgttgcctt
gagtgcgcctgccaagccaataccgactgtaaactgagggattacgctacggattacggt
gttgagagcaaaagcttagccactgaaaatgcacggcatttcagcgtagataaaagttca
ccctttattcaattcgatgctaaccgttgcattagctgcggcaaatgcgttgatgtgtgc
cagcagcagagcggccactgcgccatccaatttaccgaagattcctatcaggcgctgcca
caggaaatcagccaaagccacgtgcgccgcgcgccgagagttggctttagcgcgagcatg
gcagatagtcgctgtgtacaatgtggcaactgcgtgcaagtgtgtcccactggcgcactg
gtcgatgcgcgggacaaacgccaaggcgataaaacagcacttaaaaccgcctcgacgatt
tgtacttactgcggtgtaggctgtcgtctggatcttaaaattgaccctaacaccaatcgc
attcgccatatcgaaggcaataaagactcggttgttaaccaaggcatgttatgtgttaaa
gggcgttttggtttcgattttattcacagcgacaaacgcctcacaacaccattaatacgt
aaaaatagcgaactacaaccttgtagttggcccgaagccatcgcctatgtggcgaaacgc
ttaaccgagataaaacagcaagatggcagcaacgcgatcgctagtctcgcctcggccaaa
gcgactaacgaagataactttgtgctgcaaaagtttgtccgcagcgttcttggtaccaat
aatatcgatcactgcgcccgcctatgccactcatcgacggtaacgggcttacagcagagt
attggtagtggcgcgatgaccaatgatattccaagtattaaggactcggatgttatcttt
atcatcggttcagacaccacctgtgcgcacccgattattgcctcaaaaatccagcaggcg
gtaatgcagcacggcgcacgattaatcgtggccgatccgaaacgcgtaggcatagcagaa
aaggccgaactctatgttgcccacagaccgggcacggatgtgatgctattaaacgccatt
atggcggagattattcgcaataattggcaggataaagactatattgccgagcgtaccgaa
ggcattgaggcactgtatgccgagcttgccaagaaggactattccctcgaaaacgccgcc
ctaatcacaggtgttaaagctgaggatatcgcccgcatcgcgcgtaccataggcacagcg
caaaaaacggcggtttactacgccatgggcatcactcagcatacgacaggccacgataac
gtcaccgctatttctaacctgcaactactctgcggcaatatcggagtatcaggggcgggt
atcaatccgctgcgcggccagagtaatgtgcaaggtgcctgcgatatgggtgcattaccc
aactacttcacaggctatcaaaaggtcacggatattcatgccagaatgcgcttcgaaaac
cactggcaaacgccgttatcgggggaaattggcgtcacggcaacccatatgatgcacgac
attgccaagggcaaaatcaaagccttatatgtgatgggtgaaaatccagtgctgagcgat
cccgatcaagctcatgtgcttaatgcactgagtcaaatcgagtttctggtagtgcaggat
atctttttaaccgagacggccgagcttgcccatgtggtcttgcccgccgccgcttttgta
gaaaaacgcggtcactttaccaataccgagcgccgggtacagcgactcgagcaagcgctt
gcctcaccgggggaagccttacccgattggcagatcgtacaagcgctcgctaatgccatg
ggcgcaaactgggattacaaagatgaagaggctatttgggctgaaattaatgtattaacc
ccccagtatcgcggtattcgttgggagagattaaccataagtgcagagggtaaagtgcct
caaggtattcaatggccctgtccagatgaaaatcatccggggacaccgattatgcaccag
agtcaattcacccgcggtttaggcttatttacgcccgtcagttatcgtcttcccgccgaa
atgccctgcaacgagtacccactgacgctatcaacggggcggctcttagaacaattccac
acaggtacactcacccgaaaaacaccgggactggatttactcggcgcacctaaagtgatg
atttcagtctatgatgccgagcaactcgggataaataatggcgacagaattagccttatc
acccgccgcggcgagattgaaatagatgcctttgtgactaaacgcgcccaagccggtgta
ctgttcttgccgttccattttgtcgaagccgcagcgaacaaactcaccatcaatgcctta
gatcccgtggcttatatccctgaatataaggtttgcgcagtaagagttgaaaaggtgact
aagcgggttatcgaaccagcctaa
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