Shewanella xiamenensis: MKD32_19280
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Entry
MKD32_19280 CDS
T08228
Symbol
speF
Name
(GenBank) ornithine decarboxylase SpeF
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm00330
Arginine and proline metabolism
sxm00480
Glutathione metabolism
sxm01100
Metabolic pathways
sxm01110
Biosynthesis of secondary metabolites
sxm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
MKD32_19280 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
MKD32_19280 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
MKD32_19280 (speF)
Enzymes [BR:
sxm01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
MKD32_19280 (speF)
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GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
UML93533
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Position
4392592..4394754
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AA seq
720 aa
AA seq
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MKSLKVAASLSVRSCFEIDREVVNVLTTDFCDVGAAVVSVDDVKNGIVEKIKNTGLKLPI
FVSVCCEETFPDDICSSITGVFELCGSNTDFYGKQVETAVQKYEQALLPPFFGTLKKYVE
MGNSTFACPGHQGGQFFRKHPVGRQFFDFFGETIFRSDMCNADVKLGDLLIHEGAPLDAQ
KYAAKVFNADKTYFVLNGTSSSNKVATNALLAKGDLVLFDRNNHKSNHHGALIQAGATPI
YLETARNPFGFIGGIDAHCFQESYLREQIRAVAPERADEQRPFRLAIIQLGTYDGTIYNA
RQVVDRIGHLCDYILFDSAWVGYEQFIPMMNDCSPLLLELTPEDPGIIVTQSVHKQQAGF
SQTSQIHKKDSHIKGQARYCNHKRFNNAFMMHASTSPFYPLFAALDVNAKMHEGASGRYL
WREAVKAGIEARKLLLKKCKYIKPFIPSMIEGRPWQDYQTEQMADDLRFFEFEPGQKWHS
FEGYEKGQYFVDPCKFLLTTPGIDAETGKYTEFGIPATILANFLRENNIIPEKCDLNSIL
FLMTPAEDMAKMQHLVSQISRFEKLVDEDAPLSEVLPNVYNANKARYKDYTIRQLCQEMH
NLYVSHDVKQLQKEMFRQAHFPTKVMDPQEANLEFIRGNVELVPLSQIEGRIAAEGALPY
PPGVLCMVPGEIWGGAVQRYFLALEEGINLLPGFSPELQGVYLENTPDGKIQALGYVLNK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattaaaagttgccgccagcttatctgttagatcatgttttgaaatagacaga
gaagtcgtcaatgtattaaccacagatttttgcgatgtgggcgcggctgtagtttctgtt
gatgatgttaaaaatggtattgttgaaaaaattaaaaataccggattaaaactgcctatt
ttcgtatccgtttgctgtgaagaaaccttcccagatgatatttgctcctcgattaccggg
gtatttgaactctgcggtagcaataccgatttctatggaaaacaggtcgaaaccgccgtc
caaaaatatgagcaagccctactaccacctttctttggcaccctgaaaaaatacgttgaa
atgggcaactccaccttcgcctgtccgggccatcagggtggtcaattcttccgtaaacat
cctgtgggtcgccaatttttcgatttctttggcgaaaccattttccgctcagatatgtgt
aatgccgacgttaaactcggcgatctattaatccacgaaggcgcgccgctggatgcacaa
aaatacgcagctaaagtctttaacgccgataaaacctactttgtgctcaacggcacttct
tcttcaaacaaagtggcgaccaacgcactgctggcgaagggcgacctggtcttattcgac
cgtaacaaccataaatccaaccaccatggcgcgttaattcaagccggtgcgacaccgatt
tatttagaaaccgcccgtaaccccttcggctttattggtggcatcgacgcccactgcttc
caagagtcttatttaagggagcagatccgcgccgtagcacctgagcgtgccgatgaacaa
cgtccattccgtttagccattatccagctgggcacctacgatggcactatctacaatgct
cgccaagtcgttgatcgtattggtcatctatgtgattacatcctgtttgactcagcttgg
gttggctacgagcagtttattcctatgatgaatgactgctcgcctctactgctcgaactg
acgcctgaagatcccggtatcatcgtgactcagtcagtgcataaacagcaggctggtttc
tcacagacctcgcaaattcacaaaaaagactcacatatcaaaggccaagccagatattgc
aaccataaacgcttcaacaacgcctttatgatgcatgcctctaccagccccttctatccg
ctgtttgccgcattggatgtgaacgctaaaatgcacgaaggcgccagcggccgttatcta
tggcgtgaggcggttaaagctggtattgaagctcgcaagttactgctcaaaaaatgtaaa
tatatcaagccatttatcccaagcatgatcgaaggacgcccatggcaggattatcaaact
gaacaaatggccgatgatttacgtttcttcgagtttgaacccggacaaaaatggcactcc
ttcgagggttatgaaaaaggccaatatttcgttgacccttgtaagttcctattaaccaca
cctggaattgatgccgaaaccggtaaatatactgagtttggtattcccgcgactattttg
gctaacttcttacgtgaaaataatattattccagagaagtgcgacttaaattcgatttta
ttcctgatgacgcctgcggaagatatggcaaagatgcaacacttagtgtcgcaaatatct
cgcttcgagaaattagtcgatgaagatgcgccattatcggaagtattgcctaacgtctat
aacgccaataaagcccgttataaagactataccattcgtcaactctgccaagaaatgcac
aacctttatgtcagccatgacgtaaaacaactgcaaaaagaaatgttccgtcaggcgcat
ttcccaaccaaggtgatggacccgcaggaggccaatcttgaatttatccgtggcaatgtt
gaattagtgccactgtcgcaaatcgaaggacgaattgccgctgagggcgcactgccatat
ccacctggggtgttatgtatggtgccaggtgaaatatggggtggcgcagtacaacgttat
ttcctagcccttgaagaaggcatcaacttattacccggattctcccctgaattacaaggt
gtttacctcgaaaacaccccagacggaaaaatccaagccctaggttatgtattaaataaa
taa
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