Shewanella xiamenensis: MKD32_20390
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Entry
MKD32_20390 CDS
T08228
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sxm
Shewanella xiamenensis
Pathway
sxm03030
DNA replication
sxm03410
Base excision repair
sxm03420
Nucleotide excision repair
sxm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sxm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MKD32_20390 (polA)
03410 Base excision repair
MKD32_20390 (polA)
03420 Nucleotide excision repair
MKD32_20390 (polA)
03440 Homologous recombination
MKD32_20390 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sxm03032
]
MKD32_20390 (polA)
03400 DNA repair and recombination proteins [BR:
sxm03400
]
MKD32_20390 (polA)
Enzymes [BR:
sxm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MKD32_20390 (polA)
DNA replication proteins [BR:
sxm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MKD32_20390 (polA)
DNA repair and recombination proteins [BR:
sxm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
MKD32_20390 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MKD32_20390 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UML93734
LinkDB
All DBs
Position
4651290..4654058
Genome browser
AA seq
922 aa
AA seq
DB search
MPTIANNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAV
VFDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT
IARQASRENRAVLISTGDKDMAQLVDDNITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL
ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA
DMLKLSYELATIKTDVELEHDWHELTAKPADRDELIKCYGEMEFKRWLAEVLDNKAPTTV
AVKAETTETQEESAPSVTIETQYDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAE
LVGMSFAVEAGKAAYLPLAHDYVGAPQQLDKQTALEKLRPLLEDAKIKKVGQNLKYDISV
LANAGIKLQGVVFDTMLESYVFNSIASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFN
QIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPLIQILSDIERQGVFI
DSMLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAP
STAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG
RLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAF
AEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTY
IDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAP
MQGTAADIIKKAMINIADWIKTDTQGEIAMIMQVHDELVFEVDADKAEKLKLKVCELMAK
AANLDVELLAEAGIGDNWDQAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccatagccaataacccacttgtccttgtggatggatcttcttatttatatcgc
gcctattatgcgcctcctcacctgacaaactcaaagggcgaagctactggtgcagtttat
ggcgtagtgaatatgctccgcagcttattaagccgttatcaacctagtcatatcgctgtg
gtgttcgatgctaaaggcaaaactttccgcaatgacttatatgaagaatacaaggcgcat
cgaccaccgatgccggatgacctgcgctcacaaattgaacccctgcaccgtattatccgt
gccttaggcttgcccttaatttctatcccaggtgttgaggcagatgatgttatcggcact
atcgctcgccaagcgagccgcgaaaaccgcgccgtactcatcagtacaggcgataaagat
atggcgcagctggttgatgacaatatcacgctgatcaacaccatgacagataccattatg
ggccctgaagaagttgcggctaaatatggtgtaggtccagacagaattatcgatttctta
gcgctgatgggcgataaggcggataacattcccggtttacctggtgttggcgaaaaaacc
gcattagctatgctcacgggggcgggtagtgtagccaatttgcttgcagagcccgaaaaa
gtcaccgaattaggctttaggggcgcaaaaaccatggcggcgaagatcatcgacaatgcc
gacatgctaaagctgtcctatgagcttgccaccattaaaaccgatgttgaactcgaacat
gattggcatgagctcaccgccaaacctgctgatcgagacgaactgatcaaatgctacggc
gagatggagtttaaacgctggcttgccgaagtcttagataataaggcgccaacaacggtc
gcagtaaaagctgaaacaacagagacccaagaagaatcagcgcccagcgtcacgattgaa
acccaatacgatacgattctgaccgaagctcagcttgatgagtggattgccaaactcaaa
caagcgccattaatggccgtggataccgagaccaccagcctcgactatatggttgcggaa
cttgttggcatgtccttcgcagtggaagcaggaaaagccgcttatctgcctttagcccac
gactatgttggcgcacctcaacaattagataagcagactgcactcgaaaaactgcgcccc
ttactcgaagatgccaagatcaaaaaagtcggtcaaaatctaaaatatgacatcagcgta
ttggccaatgcaggcataaaactccaaggcgtggtattcgacactatgctcgaatcctat
gtgtttaactcgatcgcctcacgccatgatatggatgggttggcgctaaaatatctgggc
cataaaaatatcgcctttgaagatatcgccggtaaaggtgctaaacagctaacctttaac
caaattccgttggaaacagctgctccctatgcggcggaagatgccgatattacgctacgc
ctacatcaacacctgtggccaagactcgaaaaagaagctgaattagcctcagtttttacc
gatattgaactgccgctgatccaaattctgtccgatattgaacgccaaggtgtgtttatc
gatagtatgttgcttggtcaacagagtgatgaacttgcccgtaaaatcgatgagttagaa
actaaagcttatgatattgctggtgaaaaattcaatttaagttcaccaaagcaactgcaa
gtgctgttttttgaaaagctgggttatccggttatcaaaaagacgcctaagggtgcacca
tccaccgccgaagaagtgctggtcgaattggcattagattttcctttgcctaaggtgatc
cttgagcatcgcagcctgaccaagttaaagagtacttataccgataagttacctttaatg
gtgaatgctaaaacgggccgagtacacacaagctaccatcaggccaacgccgcaacgggg
cgtttatcctcgagcgaaccaaacctacagaatattcctatccgcaccgaggaaggtcgt
cgtattcgccaagcctttattgctccgcagggacgtaagattttagccgccgactattcg
cagattgaattgcggatcatggcgcatttatcccaagacgcaggcttgctcaaagccttc
gccgaaggcaaagacattcacagagccaccgccgccgaagtatttggcaccgactttgac
agcgtaacctcggagcagcgtcgccgcgccaaagccgttaactttggcctaatctatggt
atgtctgcctttggattggcgcgtcagctcgacatcccccgcaacgaggcacaaacctat
atagacacttacttcgcccgctatcctggcgtattaaggtatatggaagaaacacgagcc
agtgcagcagagctaggctatgtctctacgctatttggtcgccgtttgtatttacccgaa
attcgcgaccgtaatgcaatgcgccgccaagcagcagaaagagcagcgattaacgcccca
atgcaaggcaccgcagcggatatcataaaaaaagccatgatcaacattgccgattggata
aaaactgatacccaaggtgaaatcgccatgatcatgcaagtgcacgacgaattagtgttc
gaagtcgatgccgataaagctgaaaaactcaagctcaaggtgtgtgaactcatggccaaa
gcggccaatctggatgtagaactcctagccgaagccggcattggtgataactgggatcaa
gcccactag
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