Streptomyces xanthii: IAG42_16895
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Entry
IAG42_16895 CDS
T07861
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sxn
Streptomyces xanthii
Brite
KEGG Orthology (KO) [BR:
sxn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxn03019
]
IAG42_16895 (hrpA)
Enzymes [BR:
sxn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IAG42_16895 (hrpA)
Messenger RNA biogenesis [BR:
sxn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IAG42_16895 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_25
T2SSE
SLFN-g3_helicase
DUF6139
AAA_16
NACHT
ResIII
PhoH
NTPase_1
TsaE
RsgA_GTPase
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QNS05114
UniProt:
A0A7H1B8Q9
LinkDB
All DBs
Position
3727307..3731332
Genome browser
AA seq
1341 aa
AA seq
DB search
MSTQPAPAADRIAAVARRLSELSLRDAHRLGRRLEGARKIRKPEARAAVVAEIDAEAEKA
AVRTDTRRARRAELEVTYPEQLPVSQKKDEIADAIRDHQVVIVAGETGSGKTTQIPKICL
ELGRGVRGMIGHTQPRRIAARTVAERVAEELRTPLGDAVGWKVRFTDQVNQDATFVKLMT
DGILLAEIQTDRDLRAYDTIIIDEAHERSLNIDFLLGYLAQLLPRRPDLKVVITSATIDP
ERFSRHFGDAPIVEVSGRTYPVEVRYRPLLEEDSDDSDRDQITAITDAVEELQREGDGDI
LVFLSGEREIRDTADALEKKFARAGGAVGRSTEVLPLYARLSHAEQHRVFQRHTGRRIVL
ATNVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDG
ICIRLYSEDDFLARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGV
QLLQELGALNPAEKDVRKRLTEQGRRLAQLPVDPRLARMVLEADKNGCVREVMVIAAALS
IQDPRERPSDKQQQADQQHARFKDETSDFLAFLNLWRYVREQQKELGSSAFRRMCKREFL
NFLRIREWQDIYTQLRTVAKQMGIHLNDEDAPGDSIHVSLLSGLLSHIGMKDVKESKESQ
AKDPKQAGRDRGRNEYVGARNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNARIE
PEWVEPLAEHLLKRTYSEPHWEKDQAAVMAYEKVTLYGVPLVAQRKVNYGRIDPEVSREL
FIRNALVEGDWRTHHKFFADNRKLLTEVEELEHRARRRDIVVDDETLFDFYDQRVPEHVV
SGAHFDSWWKHKKKDEPELLDFERSMLIRESAEAVTKADYPDSWRQGRLKFRVTYQFEPG
ADADGVTVHIPLQVLNQVTDEGFDWQIPGLREDVVVELIRSLPKPIRRNYVPAPNYAKAF
LERAVPLQEPLPATLARELQRMVGVPVKADDFDLARVPDHLKITFRIVDERRRKLAEDKD
LEALKLRLKPKARQAISKAAAATAERSGGESVERTGLTDWTIGTLSKVFETRRAGQPVKA
YPALVDDGDTVSVRLFDTEAEQAQAMWKGTRRLILRNIPVNPGKFASDKLSNAAKLSLSA
NPHGSIQALFEDCAMAAADRLIGEFGGPVWDEESYRKLYEKVRAEIVDATVRTVDQVQQV
LAAWQACERRLKSTNSPVLLANLQDVRTQLNWLVKPGFVTATGTRRLPDLMRYLVAADRR
LQQMPTNVQRDTTRMEKVHEMQDEYAWLLEQMPQGRPVPQEVLDIRWMIEELRVSYFAHA
LGTAHPVSDKRIVKAIDAAVP
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcagcctgcccccgccgccgaccggatcgccgccgtagcgcggcgcctgtcc
gagctgtcccttcgcgacgcccaccgcctcggtcgcaggctggaaggggcccgcaagatc
cgtaagcccgaggcccgggccgcggtcgtcgccgagatcgacgccgaggccgagaaggcc
gcggtgcgcacggacacccgccgtgcccgccgggccgagctcgaggtcacgtaccccgaa
cagctcccggtcagccagaagaaggacgagatcgccgacgcgatccgcgatcaccaggtc
gtgatcgtggccggtgagaccggctccggcaagaccacgcagatcccgaagatctgtctg
gagctggggcgcggggtgcgcggcatgatcgggcacacccagccgcgccggatcgcggcc
cgcacggtcgccgagcgcgtggcggaggagctgcgcacgccgctgggcgacgcggtcggc
tggaaggtccgcttcaccgatcaggtgaaccaggacgcgacgttcgtgaagctgatgacg
gacggcatcctgctggccgagatccagacggaccgcgacctgcgcgcgtacgacacgatc
atcatcgacgaggcccacgagcggtccctgaacatcgacttcctgctcgggtacctggcg
cagctgctgccgcgccgtcccgacctgaaggtcgtcatcacgtcggcgacgatcgacccg
gagcgcttctcgcggcacttcggcgacgccccgatcgtcgaggtcagcggccgtacgtac
ccggtggaggtgcgctaccgcccgctcctcgaagaggactcggacgactccgaccgcgac
cagatcacggcgatcacggacgcggtcgaggagctccagcgcgagggcgacggcgacata
ctcgtcttcctctcaggcgagcgggagatccgcgacacggcggacgcgctggaaaagaag
ttcgcccgcgcgggaggcgctgtcggacgcagcaccgaagtgctgccgctgtacgcgcgg
ctctcgcacgcggagcagcaccgggtcttccagcgccacacgggccgccggatcgtcctc
gcgacgaacgtggcggagacgtccctgaccgtccccggcatcaagtacgtgatcgacccg
ggcaccgcccgcatctcgcgctacagccaccgcacgaaggtgcagcggctgcccatcgag
ccggtcagccaggccagcgccaaccagcgcaagggccgctgcggccgtacgagcgacggc
atctgcatccggctgtactcggaggacgacttcctcgcccgccccgagttcacggacgcg
gagatcctccgcacgaacctggcctccgtcatcctgcagatgaccgcggccggcctcggc
gacatcgagaagttccccttcatcgacccgccggaccaccgcaacatccgcgacggcgtc
caactgctccaggaactgggcgcgttgaacccggcggagaaggacgtccgcaagcggctc
acggaacagggccgccgcctcgcccagcttcccgtcgacccgcgcctggcccgtatggtc
ctggaggcggacaagaacggctgcgtgcgcgaggtcatggtgatcgcggccgcgctgtcc
atccaggacccgcgcgagcgcccttccgacaagcagcagcaggccgaccagcagcacgcc
cgcttcaaggacgagaccagcgacttcctggcgttcctcaacctgtggcggtacgtgcgc
gaacagcagaaggagctcggctcctccgcgttccgccggatgtgcaagcgcgagttcctg
aacttcctgcgcatccgcgaatggcaggacatctacacgcagctgcgcacggtcgccaag
cagatgggcatccatctcaacgacgaggacgcccccggcgactccatccacgtctccctc
ctgtccggtctgctctcgcacatcggcatgaaggacgtgaaggagtcgaaggagtcgcag
gccaaggaccccaagcaggcgggccgcgaccgcggtcgcaacgagtacgtcggcgcgcgg
aacgcgaagttcgcgatcttccccggctcggcgctgttcaagaagccgccgcggttcgtc
atgtccgcggagctggtggagaccagccggctctgggcgcgggtgaacgcgaggatcgag
cccgagtgggtcgagcccctcgccgagcacctcctcaagcgcacgtacagcgagccgcac
tgggagaaggaccaggcggccgtgatggcgtacgagaaggtgacgctgtacggcgtcccg
ctcgtggcccagcgcaaggtgaactacgggcgcatcgacccggaggtctcgcgcgagctg
ttcatcaggaacgcgctggtggagggcgactggcgcacccaccacaagttcttcgcggac
aaccgcaagctgctcaccgaggtcgaggagctggagcaccgggcgcgccgccgcgacatc
gtggtggacgacgagacgctcttcgacttctacgaccagcgggtgccggagcacgtcgtc
tcgggcgcgcacttcgactcctggtggaagcacaagaagaaggacgagcccgagctgctc
gacttcgagcgctcgatgctgatccgcgagtccgcggaggcggtcaccaaggccgactac
ccggactcgtggcggcagggccggctgaagttccgggtgacgtaccagttcgagccgggc
gcggacgcggacggcgtcaccgtccacatcccgctccaggtgctcaaccaggtgacggac
gagggcttcgactggcagatcccgggtctgcgcgaggacgtcgtggtcgagctgatccgc
tcgctgcccaagccgatccggcgcaactacgtgccggcgccgaactacgcgaaggcgttc
ctggagcgggccgtgcccctgcaggagccgctgccggcgacgctcgcgcgcgagctccag
cgcatggtcggggtcccggtgaaggccgacgacttcgacctcgcccgcgtccccgaccac
ctgaagatcaccttccggatcgtcgacgagcggcgccgcaagctcgccgaggacaaggac
ctggaggcactgaagctccggctgaagccgaaggcccggcaggcgatctccaaggcggcc
gcggcgacggccgagcgctccggcggggagtccgtcgagcgcacgggcctgacggactgg
acgatcggcacgctgtcgaaggtcttcgagacccgccgcgccggccagccggtcaaggcg
tacccggcgctcgtcgacgacggcgacaccgtctccgtacggctcttcgacacggaggcc
gagcaggcgcaggccatgtggaagggcacgcgccggctcatcctgcgcaacatcccggtg
aacccgggcaagttcgcctccgacaagctgagcaacgcggcgaagctctccctctccgcg
aacccgcacggctcgatccaggcgctgttcgaggactgcgcgatggcggccgcggaccgg
ctcatcggggagttcggcgggcccgtctgggacgaggagtcgtaccgcaagctgtacgag
aaggtgcgggccgagatcgtcgacgcgacggtgcgcacggtggaccaggtgcagcaggtg
ctggccgcctggcaggcctgcgagcggcgcctgaagtcgacgaacagcccggtgctgctc
gccaacctccaggacgtgcgcacccagttgaactggctggtgaagccgggcttcgtgacg
gccacggggacgcgccggctgccggacctcatgcggtacctggtcgcggccgaccggcgg
ctccagcagatgccgaccaacgtccagcgggacaccacccgtatggagaaggtccacgag
atgcaggacgagtacgcctggctgctcgaacagatgccgcaggggcggccggtgccgcag
gaggtcctggacatccgctggatgatcgaggagctccgggtcagctatttcgcacacgcc
ctgggcaccgcgcaccccgtctcggacaagcggatcgtgaaggcgatcgacgccgccgtg
ccgtaa
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