Streptomyces xanthophaeus: KPP03845_102765
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Entry
KPP03845_102765 CDS
T08962
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sxt
Streptomyces xanthophaeus
Pathway
sxt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPP03845_102765 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxt03019
]
KPP03845_102765 (rne)
03009 Ribosome biogenesis [BR:
sxt03009
]
KPP03845_102765 (rne)
Enzymes [BR:
sxt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KPP03845_102765 (rne)
Messenger RNA biogenesis [BR:
sxt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KPP03845_102765 (rne)
Ribosome biogenesis [BR:
sxt03009
]
Prokaryotic type
rRNA processing factors
KPP03845_102765 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WCD86417
LinkDB
All DBs
Position
complement(2973108..2977169)
Genome browser
AA seq
1353 aa
AA seq
DB search
MLNNENDTTTPAGNADNGSPSDNLPPRRRRRAASRPAGPPGATAAETAAVTEAAPADTQA
TEAEAAPAAAPARTRRRATRAVAAPAAPAAEAAEAVVTEAPAAAQAAVEEEAPAAPAPRA
RRRATRAVTAPEAPAAEAAPAPAAVEEEAPAAPAPRARRRATRAVTAPEAPAVEAAPAPA
VAEAAPVVEEEAPAAPAPRARRRATRAVTAPAAPAAEAAEALVTEAPAAVPAAAPAAVVA
EESAAPAPRARRRATRAVTAPEAPAAEAAPAPAAVEEAPRAATRSVTVADAVDSPKRGGR
RRATRAGSPAAAAQPAAEAEAPAAPGRARRAARPAVAVFQAPVFAEPMFQTPETAAMAAM
AARAATPAEEPEEEETELEAEVEVVQTPAPQPAGRRRRRGRGAAEPAPAAETGPVSLPEV
LAEEEPEAEAAELEDESAEFEEGDESGERPSRRRRRGGRRRRRGESADLDESAEDEAEAP
AGEQEADEAEDEDDEDSGALGSSSSRRRRRRRRRSGDSAADAAETGEEDGVRTVVKVREP
RPARERAESTSSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERV
MVVRQAGERTQIGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPSMEAAFIDIGKGR
NAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYL
VYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQA
QWEDIQKKSKQISTSSPSLLYGEPDMTVRVVRDIFNEDFSKVIVSGDSAWETIHGYVNHV
APDLADRLSRWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGK
FTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECL
GRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMETPTVVGGGGN
GKRSKRRGGKSDSDQHEHDVETVDVEFEAETETEAEVAAEAASPRALPEPEFVADEELYS
SPAEAEAAAGLSGRRNRRRATRKATAPAGAPRGAAPAPAQAPAPVVEAEPVTEPADTVLE
PEAEVVTEAVAAAETVEAAPVDEAAPKGRTRRRATRKATAPAGAPAPAAEVAPEPVVVPE
PVVEPEPAVAEPEAPAPAAVVEEAPVAEAAPARPRRRATRKATAPAGSPAGAAEAAVVVV
ETAPAEPQAPVEEAAPSEEPAPAKKAARKAPAKKAATAKKATTAKKATAAKKATTSTAKK
TATTKKTAAKRTTKKTAAAEQQTPPSVSAPTEA
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgctcaacaacgaaaacgacaccaccacccccgccggtaacgccgacaacggcagcccg
agcgacaacctgccgccgcgccggcgccgccgcgccgcgtcccggcccgccggtcccccc
ggcgccaccgccgccgagaccgccgcggtgaccgaggccgctccggccgacacccaggcg
accgaggcggaggccgccccggccgccgctcccgcccgtacccgccgccgtgccacccgc
gccgtcgccgccccggctgctccggccgccgaagccgccgaggccgtggtgaccgaggct
ccggccgctgctcaggccgccgtggaggaagaggccccggccgctcccgccccgcgtgcc
cgtcgtcgtgcgacccgcgccgtgaccgcccccgaggctccggccgccgaggccgcaccg
gctcccgccgccgtggaggaggaggccccggccgctcccgccccgcgtgcccgtcgtcgt
gcgacccgcgccgtgaccgcccccgaggcccccgccgtcgaggccgcgccggctcccgcc
gtggccgaggccgcgcccgtcgtggaggaggaggccccggccgctcctgccccccgtgcc
cgccgccgtgccacccgcgccgtgaccgctccggctgctccggccgccgaagccgccgag
gccctggtgaccgaggctccggccgctgtcccggctgctgctccggccgccgtcgtggcc
gaggaaagcgctgctcccgccccgcgtgcccgtcgtcgtgcgacccgcgccgtgaccgcc
cccgaggctccggccgccgaggccgcaccggctcccgccgccgtggaggaggccccccgg
gccgccacccgctccgtgaccgtcgccgacgccgtggactccccgaagcgcggcggccgc
cgccgcgccacccgtgccggttccccggccgctgccgcgcagcccgccgccgaggccgag
gcgcccgccgccccgggccgcgcccgccgcgccgcgcgtcccgccgtggccgtgttccag
gccccggtcttcgccgagccgatgttccagacccccgagaccgcagccatggccgccatg
gccgcccgcgccgccactccggccgaggagccggaggaggaggagacggagctcgaggcc
gaggtcgaggtcgtccagacccccgccccgcagccggccggccgtcgccgccgccgtggc
cgtggcgccgcggagcccgcgccggccgccgagaccggtccggtctccctgcccgaggtg
ctcgccgaggaggagccggaggccgaggccgccgagctcgaggacgagtccgccgaattc
gaggagggcgacgagtcgggcgagcgcccgtcccgccgccgccgtcgcggtggccgtcgt
cgccgccgtggcgagtccgccgacctcgacgagtccgccgaggacgaggccgaggccccg
gccggcgagcaggaggccgacgaggccgaggacgaggacgacgaggactccggcgccctc
ggctccagctccagccgtcgccgccgtcgccgccgccgtcgcagcggtgactccgccgcc
gacgccgccgagaccggcgaggaggacggcgtacggaccgtcgtcaaggtccgcgagccg
cgtccggcccgcgagcgcgccgagtccacctcctccgacgaggtgcagtccatcaagggc
tcgacccgtctggaggcgaagaagcagcgccgccgcgagggccgcgagcagggccgccgc
cgcgtcccgatcatcaccgaggccgagttcctggcccgccgcgaggccgtcgagcgcgtc
atggtcgtccgccaggccggcgagcgcacccagatcggcgtcctcgaggacaacgtgctc
gtcgagcactacgtcaacaaggaagaagccacctcgtacgtcggcaacgtctacctgggc
aaggtccagaacgtgctgccgtccatggaggccgccttcatcgacatcggcaagggccgc
aacgcggtcctgtacgccggtgaggtcaacttcgaggcgctcggcatggccaacgggccg
cgccgcatcgagtccgccctcaagtccggccagtccgtcctcgtgcaggtcaccaaggac
ccgatcggccacaagggcgcccgcctgaccagccaggtctcgctgcccggccgctacctg
gtctacgtgcccgagggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgc
gctcgcctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgc
accgccgccgagggtgcgagcgaggacgagctgcgccgcgacgtcgagcgcctgcaggcc
cagtgggaggacatccagaagaagtcgaagcagatctcgacctcttcgccgagcctgctg
tacggcgagccggacatgaccgtccgcgtcgtgcgcgacatcttcaacgaggacttctcg
aaggtcatcgtcagcggtgacagcgcctgggagaccatccacggctacgtgaaccacgtg
gccccggacctggccgaccggctgtcgcgctggacctccgaggtcgacgtcttcgcgacg
taccggatcgacgagcagctcgccaaggcgctcgaccgcaaggtgtggctgccctcgggc
ggctcgcttgtgatcgacaagaccgaggcgatgatcgtcatcgacgtcaacaccggcaag
ttcaccggtcagggcggcaacctcgaggagaccgtcaccaggaacaacctggaggcggcc
gaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcgtcgtgatcgacttc
atcgacatggtcctggagtccaaccgcgacctggtcctgcggcggatgctggagtgcctg
ggccgtgaccggaccaagcaccaggtcgccgaggtgacctcgctgggcctggtccagatg
acccgcaagcgggtgggccagggtctgctggagtccttctccgagacctgtgtccactgc
aacggccgcggtgtcatcgtgcacatggagaccccgaccgtggtcggcggcggtggcaac
ggcaagcgttccaagcgccgtggcggcaagtcggactccgaccagcacgagcacgacgtc
gagaccgtggacgtggagttcgaggccgagaccgagaccgaggccgaggtggccgccgag
gccgcttcgccgcgggccctgcccgagccggagttcgtcgcggacgaggagctctacagc
agcccggccgaggccgaggccgcggcgggtctgagcggccgccgcaaccgccgtcgcgcc
acccgcaaggcgaccgccccggcgggtgccccgcgcggtgcggccccggccccggcgcag
gctccggcccccgtggtcgaggccgagccggtgaccgagcccgctgacacggtcctcgag
cccgaggccgaggtcgtcaccgaggccgtggcggccgcggagacggtcgaggcggcaccg
gtcgacgaggccgcgccgaagggccgtacccgtcgccgggcgacccgcaaggccaccgcc
ccggcgggtgccccggcccccgcggccgaggttgccccggagccggtcgtcgtgccggag
ccggtcgtggagcccgagccggcggtcgccgagcccgaggcgcccgccccggcggccgtc
gtcgaggaggcccccgtggcggaggccgcaccggcccgtccgcgtcggcgtgccacacgt
aaggccaccgccccggccggatccccggcgggtgcggcagaggccgccgtggtggtcgtc
gagaccgctccggcggagccgcaggcccccgtcgaggaggccgcaccgtccgaggagccc
gccccggcgaagaaggccgcccgcaaggctccggccaagaaggcggccacggcgaagaag
gccaccaccgccaagaaggcgacggcggccaagaaggcaaccaccagcacggccaagaag
acggccaccaccaagaagaccgcggcgaagcggacgacgaagaagaccgcggcggcggag
cagcagaccccgccctcggtctcggcgccgaccgaagcctga
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