Streptomyces xanthophaeus: KPP03845_103208
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Entry
KPP03845_103208 CDS
T08962
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sxt
Streptomyces xanthophaeus
Pathway
sxt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sxt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KPP03845_103208 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxt03400
]
KPP03845_103208 (mfd)
Enzymes [BR:
sxt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KPP03845_103208 (mfd)
DNA repair and recombination proteins [BR:
sxt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KPP03845_103208 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
UB2H
RecG_dom3_C
4HBT_3
Motif
Other DBs
NCBI-ProteinID:
WCD86845
LinkDB
All DBs
Position
complement(3492480..3496019)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSLHGLLDAVTRDPALAEAVTAAGDGNRMHVDLVGPAAARPFAIAALARETGRTVLAVTA
TGREAEDLAAALRSLLPPDEVVDYPSWETLPHERLSPRSDTVGRRIAVLRRLAHPSGDDP
AAGPVSVVVAPIRSVLQPQVKGLGDLVPVSLRQGGSADLGEITQALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDQVRERAAALAEAHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLIDVLPARAMAV
VCDPERVRTRAADLVATSQEFLMASWAATAGGGEAPIDVGAASLRGIADVRDRARELGMM
WWSVSPFAADETVGGDTLKLGMHAPEAYRGDTARALADTKGWIADGWHTVYLTEGHGPAA
RTVEVLGGEGIPARLEPDLRTLEPSLVHVACGSLDNGFVDPALRLAVLTETDLTGQRTAT
KDLGRMPTRRRKSIDPLTLEAGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVKVKALSRFQSDTESKA
TLEGLREGSVDVVIGTHRLFSQETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQCFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAVRDGV
DGAVEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAANSEEDVKAVREELTDRYG
KLPEPVENLLLVAGLRMLARACGVGDITLQGPNIRFGPVELRESQELRLKRLYPGAVLKP
ATSQVLIPRPKTARVGGKPLVGRELLAWTGEFLATILGS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgccgtcacccgggaccccgctctcgccgaggcggtc
accgcggccggggacggcaaccgcatgcacgtggatctggtcggccccgccgccgcgcgg
cccttcgcgatcgccgcgctggcccgggagaccgggcggaccgtcctggcggtcaccgcc
accgggcgcgaggccgaggacctggccgccgcgctgcgctcgctgctgccgcccgacgaa
gtggtggactacccgtcctgggagacgctcccgcacgagcggctcagcccgcgcagcgac
accgtcggccgccggatcgccgtcctgcgccgcctcgcccacccgtccggggacgacccc
gccgccgggcccgtctccgtcgtggtcgcccccatccgctccgtgctccagccgcaggtc
aaggggctcggggacctcgtacccgtgagcctgcgccaggggggcagcgccgacctcgga
gagatcacccaggcgctggccgcggccgcgtacgcccgggtcgagctggtcgagaagcgc
ggggagttcgccgtgcgcggcggcatcctcgacgtgttcccgccgaccgaggaacacccg
ctgcgcgtcgagttctggggcgacgaggtcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggaggtcgccgagcacgggctgtgggccccgccctgccgcgagctgctg
ctgaccgaccaggtgcgcgagcgggccgcggccctcgccgaggcgcaccccgagctcggc
gagctgctgaacaagatcgccgaggggatcgccgtcgagggcatggagtccctggccccg
gtcctggtcgacgacatggagctgttgatcgacgtgctgcccgcccgggcgatggccgtg
gtctgcgacccggagcgggtacggacgcgcgccgccgacctggtggccacctcccaggag
ttcctgatggcctcctgggccgccaccgcgggcggcggcgaggcccccatcgacgtgggc
gccgcctcgctgcgcgggatcgcggacgtccgcgaccgggcccgtgagctcggcatgatg
tggtggtcggtctcccccttcgccgcggacgagaccgtgggcggcgacaccctcaagctc
ggcatgcacgctccagaggcctaccgcggggacaccgcccgggcgctcgccgacaccaag
ggctggatcgccgacggctggcacaccgtctacctcaccgagggccacggccccgccgcc
cgcaccgtggaggtcctcggcggcgagggcatcccggcccggctggagccggacctgcgc
acgctggagcccagcctggtgcacgtcgcctgcggctccctcgacaacggcttcgtcgac
ccggccctgcgcctggccgtcctcaccgagaccgacctgaccggccagcgcaccgccacc
aaggacctcgggcggatgccgacccggcgccgcaagagcatcgacccgctgaccctggag
gccggcgactacatcgtccacgagcagcacggcgtgggccgctacgtcgagatggtgcag
cgcaccgtccagggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccggctgtacatccccaccgaccagctggagcaggtcaccaagtac
gtcggcggggaggccccgaccctgcaccggctgggcggcgccgactggaccaagaccaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctctacagcgcc
cgcatggcggcccccggccacaccttcggcccggacaccccctggcagcgggagctggag
gacgccttcccgtacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccgtctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtgcgcgccgcgttcaaggcggtgcaggacggcaagcaggtcgccgtc
ctcgtgcccaccaccctgctggtgcagcagcacttcgggaccttctccgagcgctacagc
cagttccccgtcaaggtgaaggcgctgtcgcggttccagtccgacaccgagtccaaggcc
accctggaggggctgcgcgagggctcggtggacgtggtcatcggcacgcaccggctgttc
tcgcaggagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtggagcacaaggagcagctgaagaagctccgggccaacgtcgacgtgctgacgatg
tcggcgaccccgatcccgcgcaccctggagatggcggtgaccggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcggcacccggtgctcaccttcgtcggcccgtacgag
gagaagcagatcggcgcggcggtccggcgcgaactgctgcgcgagggccagtgcttctac
atccacaaccgggtcgagtccatcgaccgggcggcagccaggctccgggagatcgtgccc
gaggcgcggatcgcgaccgcgcacggccagatgtcggaacaggccctggagcaggtcgtc
gtggacttctgggagaagaagttcgacgtgctggtgtcgacgacgatcgtggagtcgggc
atcgacatctccaacgcgaacaccctgatcgtggagcgcggcgacaacttcggcctctcg
cagctgcaccagctgcgcggccgcgtgggccgtgggcgcgagcgcgggtacgcgtacttc
ctgtacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacatccgcatggtcggcgaggcggtggccgactaccgggccgcggtgagggatggcgtc
gacggggccgtggaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcac
gtcccgcacgactacgcgccgggcgagcggctgcgcctgcaggcctaccgttcgatcgcc
gcggccaactccgaggaggacgtcaaggccgtgcgggaggaactcaccgaccgctacggc
aagctgccggagccggtggagaacctgctgctggtggccgggctgcggatgctcgcccgg
gcctgcggggtcggcgacatcaccctccagggccccaacatccgcttcgggccggtggaa
ctgcgcgaatcgcaggagctgcgcctcaagcggctctacccgggggcggtgctcaagccc
gcgacctcgcaggtgctgatcccgcggccgaagacggcccgggtcggcgggaagccgctg
gtcgggcgggaactgctggcctggaccggggagttcctcgccacgatcctcggttcgtag
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