Streptomyces xanthophaeus: KPP03845_104045
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Entry
KPP03845_104045 CDS
T08962
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sxt
Streptomyces xanthophaeus
Brite
KEGG Orthology (KO) [BR:
sxt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sxt03019
]
KPP03845_104045
Enzymes [BR:
sxt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KPP03845_104045
Messenger RNA biogenesis [BR:
sxt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KPP03845_104045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
SLFN-g3_helicase
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
ResIII
NTPase_1
PhoH
TsaE
AAA_30
HTH_15
UvrD-helicase
MetJ
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WCD87656
LinkDB
All DBs
Position
complement(4414772..4418710)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSNSFAALQTLLGELSLRDAHRLGRRLEGARRIRKPEAKQAVLDEIAAEAEKAAARLAGR
ASRMPEVTYPENLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERIAEELKSEIGQTVGWKVRFTDQVDQDATFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVVITSATIDPQRFSRHFGD
APIVEVSGRTYPVEVRYRPLLEEDGDGTDAADSDRDQITAICEAVDELQSEGPGDILVFL
SGEREIRDTADALNKRNLRFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTV
PGIKYVIDPGTARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLYSEADF
TTRPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDP
AEKDHSKRLTPMGRKLSQLPVDPRLARMVVEADKNNCVREVMVIAAALSIQDPRERPSDK
QTQADQNHARFKDETSDFLAFLNMWRYVREQQKERGSSAFRRMCKQEYLNFLRIREWQDI
YSQLRTVAKTMGIHVNETDAPEHSVHVSLLAGLLSHIGLKDTDKNEYLGARSAKFAVFPG
SALFKKQPKFLMSAELVETSRLWARVNAKVEPEWVEPLAQHLIKRTYSEPHWEKDQAAVM
AYEKVTLYGVPIVAQRKINYGRIDPEVSRELFIRNALVEGDWRTHHKFYADNRKLLTEVE
ELENRARRRDIVVDDETLFDFYDEKIPEHVVSGAHFDSWWKHKKREEPELLDFEREMLLT
EKAAGVTKADYPDSWQQGRLKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGFDWQIPG
LREEVVTELIRSLPKPIRRHYVPAPNFASRFLATSHPLQEPLHVTLARELQRMVGVPVSA
EDFDLTRIPDHLKITFRIVDERRKNLAEAKDLEALRLQLKPKARQALAKAAAATAERAGG
ESVERTGLTDWTIGTLDKVFETRRAGQPVKAYPALVDQGTTVSVRLFDTEAEQQQAMWLG
TRKLILLNIPVNPAKFASDHLSNQQKLALSRNPHGSIQALFDDCATAAADKLIADHGGPA
WDEAGFRKLYEAVRADLVDATVRTVQQVQQVLAAWQSCERRLKATSSLALVANLQDVKTQ
LAALVPAGFVTLTGVRRLADLMRYLVAADRRLQQMPTGVQRDTTRMEKVHEMQDEYAWLL
EQLPKGRPVPSAVTDIRWMIEELRVSYFAHALGTAYPISDKRIVKAVDAAAP
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaattccttcgctgccctgcagacgcttctcggtgagctctccctccgtgatgcg
caccgcctcggccgccgcctcgagggcgcccgccgcatccgcaagcccgaggccaagcag
gccgtgctcgacgagatcgccgcggaggccgagaaggccgccgcgcgactggccggccgt
gcctcgcggatgcctgaggtcacgtatcccgagaacctgcccgtcagccagaagaaggac
gagatcgccgaggcgatacgcgaccaccaggtcgtgatcgtcgcgggcgagacgggttcc
ggcaagaccacgcagatccccaagatctgcatggagctgggccggggcgtccggggcatg
atcgggcacacccagccccgccggatcgccgcccgcacggtagcggagcggatcgccgag
gagctgaagtccgagatcggccagaccgtcggctggaaggtccggttcaccgaccaggtg
gaccaggacgcgaccttcgtgaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccacgagcggtcc
ctgaacatcgacttcctgctcggctacctggccacgctgctgcccaagcgtcccgacctg
aaggtcgtcatcacctcggcgacgatcgacccgcagcggttctcccggcacttcggcgac
gcgccgatcgtcgaggtcagcggacgtacgtacccggtggaggtccgctaccggccgctg
ctggaggaggacggcgacggcacggacgcggcggactccgaccgggaccagatcaccgcg
atctgcgaggccgtggacgaactccagtccgaggggccgggcgacatcctggtcttcctc
tccggcgagcgcgagatccgcgacacggcggacgccctgaacaagcgcaacctccgcttc
accgaggtgctccccctgtacgcgcggctctcgcacgccgagcagcaccgggtgttccag
cagcacaccggccgtcggatcgtcctcgcgaccaacgtcgccgagacctccctcaccgtc
ccgggcatcaagtacgtgatcgacccgggcaccgcccggatctcccgctacagccaccgc
accaaggtgcagcggctgcccatcgaacggatctcccaggccagcgccaaccagcgcaag
ggccgctgcgggcgcaccagcgacggcatctgcatccggctctactccgaggccgacttc
accacccggcccgagttcaccgacgcggagatcctgcgcacgaacctggcctccgtcatc
ctccagatgaccgcggccggcctcggcgagatcgagaagttccccttcatcgacccgccg
gaccaccgcaacatccgcgacggcgtgcagctgctccaggagctcggcgccctggacccg
gcggagaaggaccacagcaagcggctcaccccgatgggccgcaagctctcccagctgccc
gtggacccgcgcctggcccgcatggtcgtggaggccgacaagaacaactgcgtccgcgag
gtcatggtcatcgcggcggccctgtccatccaggacccgcgcgagcggccttcggacaag
cagacccaggcggaccagaaccacgcccgcttcaaggacgagaccagcgacttcctggcc
ttcctgaacatgtggcgctacgtccgcgagcagcagaaggagcggggctcctccgccttc
cgccggatgtgcaagcaggagtacctgaacttcctgcggatccgcgagtggcaggacatc
tactcgcagctgcgcacggtcgccaagaccatgggcatccacgtcaacgagaccgacgcc
cccgagcacagcgtgcacgtctcgctgctggccgggctgctctcgcacatcggcctgaag
gacacggacaagaacgagtacctgggtgcccggtcggcgaagttcgcggtcttcccgggc
tcggcgctgttcaagaagcagccgaagttcctgatgtcggcggagctggtggagacctcg
cggctgtgggcccgggtcaacgccaaggtggagccggagtgggtggagccgctcgcgcag
cacctgatcaagcgcacctacagcgagccgcactgggagaaggaccaggccgccgtgatg
gcgtacgagaaggtcacgctgtacggcgtaccgatcgtcgcccagcggaagatcaactac
ggccggatcgaccccgaggtctcgcgcgagctgttcatccgcaacgcgctggtcgagggc
gactggcggacccaccacaagttctacgccgacaaccgcaagctcctcaccgaggtggag
gagctggagaaccgggcccggcgccgcgacatcgtggtggacgacgagaccctgttcgac
ttctacgacgagaagatccccgagcacgtggtctccggggcgcacttcgactcctggtgg
aagcacaagaagcgcgaggagcccgagctcctcgacttcgagcgggagatgctgctcacc
gagaaggcggccggggtcaccaaggccgactacccggactcctggcagcagggccggctg
aagttccgggtgacctaccagttcgagccgggcgcggacgcggacggcgtgaccgtccac
atcccgctccaggtgctcaaccaggtcaccgacgagggcttcgactggcagatccccggg
ctgcgcgaggaggtggtcaccgagctgatccgctcgctgcccaagccgatccgccggcac
tacgtgcccgcgccgaacttcgcgtcccgcttcctggccacctcgcacccgctccaggag
cccctgcacgtcaccctggcgcgcgagctccagcggatggtcggagtcccggtgtcggcc
gaggacttcgacctgacccgcatcccggaccatctgaagatcaccttccggatcgtcgac
gagcggcgcaagaacctcgccgaggccaaggacctggaggccctgcgcctgcagctgaag
cccaaggcgcgccaggccctggcgaaggccgcggcggccaccgccgagcgggcgggcggg
gagtcggtggagcggaccgggctgaccgactggacgatcggcacgctggacaaggtcttc
gagacccggcgggccggccagccggtgaaggcgtacccggcgctcgtggaccagggcacg
accgtgtccgtacggctcttcgacaccgaggccgagcagcagcaggcgatgtggctgggc
acccggaagctgatcctgctgaacatcccggtgaacccggcgaagttcgcctcggaccac
ctgagcaaccagcagaagctggccctgtccaggaacccgcacggctccatccaggcgctg
ttcgacgactgcgccacggcggcggccgacaagctgatcgccgaccacggcgggcccgcg
tgggacgaggcgggcttccgcaagctctacgaggccgtacgggccgacctggtggacgcc
acggtgcgcacggtgcagcaggtgcagcaggtgctggccgcctggcagtcctgcgagcgg
cggctgaaggccaccagcagcctcgccctggtcgcgaacctccaggacgtgaagacgcag
ctcgcggcgctcgtgccggccgggttcgtcaccctgaccggcgtacgcaggctggcggac
ctgatgcgctacctggtggcggccgaccggcggctccagcagatgcccacgggcgtccag
cgcgacaccacgcgcatggagaaggtccacgagatgcaggacgagtacgcctggctgctg
gagcagctccccaagggccggccggtcccgtccgcggtgaccgacatccgctggatgatc
gaggaactccgggtcagctacttcgcccacgcgctcggcacggcgtacccgatctcggac
aagcggatcgtgaaggcggtggatgcggcggccccgtga
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integrated database retrieval system
