Streptomyces xanthophaeus: KPP03845_104332
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Entry
KPP03845_104332 CDS
T08962
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sxt
Streptomyces xanthophaeus
Brite
KEGG Orthology (KO) [BR:
sxt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sxt03016
]
KPP03845_104332 (rtcB)
Enzymes [BR:
sxt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KPP03845_104332 (rtcB)
Transfer RNA biogenesis [BR:
sxt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KPP03845_104332 (rtcB)
Prokaryotic type
tRNA splicing ligases
KPP03845_104332 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WCD87931
LinkDB
All DBs
Position
4713482..4714675
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AA seq
397 aa
AA seq
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MSYVEVPGAKVPIRMWTDPASVEAGAMQQLHNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMKDAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSKLRSKVEQAIPVGMGLHKEAVDPS
RLYGFSAEGYDDLWKRFDYITDAVKFRRERAARQIGTLGGGNHFWELCLDTEGAVWIMLH
SGSRNIGNELAAHHISVARGLDHNQNLVDRDLAVFLAATPEMEAYRGDLFWAQEYAKYNR
AAMMAVSKEVVRREFRKAKVSFGQEISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNDKSFNSASHGAGRKMSRTAAKRKFSARDLAEQTKGVECRKDAG
VVDEIPGAYKSIEQVIDQQTDLVEVVAKLKQVICIKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtagaagtgcccggggcgaaggtgcccatccggatgtggacggatccggcg
tcggtcgaggccggtgcgatgcagcagctgcacaacgtcgccaccctcccgtggatcaag
ggcctggccgtcatgcccgacgtgcactacggcaagggcgccacggtcggctcggtgatc
gcgatgaaggacgccgtctgcccggcggcggtcggcgtggacatcggctgcggcatgtcg
gcggtgaagacctccctgacggcgaacgacctgccgggcgacctctccaagctccgctcg
aaggtcgagcaggcgatcccggtcgggatgggcctgcacaaggaggccgtcgacccgtcg
cggctgtacggcttctcggccgaggggtacgacgacctctggaagcgcttcgactacatc
accgacgcggtgaagttccggcgcgagcgcgcggcccggcagatcgggacgctgggcggc
ggcaaccacttctgggagctctgcctcgacaccgagggcgccgtgtggatcatgctgcac
tccggctcccggaacatcggcaacgagctcgccgcgcaccacatctccgtggcccggggg
ctggaccacaaccagaacctggtcgaccgggacctcgcggtcttcctcgccgccacgccg
gaaatggaggcgtaccggggcgacctcttctgggcgcaggagtacgccaagtacaaccgc
gccgcgatgatggccgtctccaaggaggtcgtccgcagggagttccgcaaggcgaaggtc
tccttcggccaggagatcagctgccaccacaactacgtggcggaggagcggtacgacggc
atggacctgctggtcacccgtaagggcgcgatccgcgcgggcagcggcgactacgggatc
atcccgggctcgatgggcacgggctcgtacatcgtgaagggcctcggcaacgacaagtcc
ttcaactcggcctcgcacggcgcgggccggaagatgagccgtacggcggcgaagcggaag
ttctcggcgcgggacctggcggagcagaccaagggcgtggagtgccgcaaggacgcgggc
gtcgtggacgagatcccgggcgcgtacaagtcgatcgagcaggtcatcgaccagcagacc
gacctcgtcgaggtcgtggccaagctgaagcaggtcatctgcatcaagggctga
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