Streptomyces xanthophaeus: KPP03845_105094
Help
Entry
KPP03845_105094 CDS
T08962
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sxt
Streptomyces xanthophaeus
Pathway
sxt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sxt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPP03845_105094 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sxt03021
]
KPP03845_105094 (rho)
03019 Messenger RNA biogenesis [BR:
sxt03019
]
KPP03845_105094 (rho)
Transcription machinery [BR:
sxt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KPP03845_105094 (rho)
Messenger RNA biogenesis [BR:
sxt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KPP03845_105094 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA
NACHT
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
WCD88684
LinkDB
All DBs
Position
5517357..5519504
Genome browser
AA seq
715 aa
AA seq
DB search
MSDTTDLMGAADTNVDTSAPAAGAAPKRRRTGTGLDGMVLAELQQVASGLGIRGTARMRK
SQLIEVIKEAQAGGSAPKAASSAAGAADTAEAKPKRRATSKARTGEAAAEAPAEKPAAQA
QIEIPGQPAGGPSRSSAAESGGEDAPVGERRRRRATAPSGSPEASAPAAVQVEQKTETVK
AEAAAQPEAKAEAATAVSGQAQGQDGEGRGRRERRDRGDRAERGDRQRDRRDRGAKADEP
GQGAPAGQGGQGGGRQDRADRQDRQQQGGRGQGQSQGQGQQGRQDRQDRQGPQDNGPQDD
FDDEGGRRGRRGRYRDRRGRRGRDEFAPNEPQVADDDVLIPVAGILDILDNYAFIRTSGY
LPGPNDVYVSLAQVRKAGLRKGDHTTGAVRQPKDGERREKFNALVRLDSVNGMAPESGRG
RPEFQKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQRGLIVAPPKTGKTMIMQAIA
NAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAKR
LVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEDGGS
LTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVDPSGTRKEEILL
NAEELAIVWKLRRVLHALDSQQAIELLLDKMKQTKSNAEFLMQIAKTTPSGKNDD
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgctgccgacaccaatgtcgacaccagtgccccc
gccgcgggcgccgcgcccaagcgtcgccgcaccggcaccggcctcgacggcatggtcctg
gccgagcttcagcaggtcgcgtcgggcctcggcatcaggggcaccgcgcggatgcgcaag
agccagctgatcgaggtcatcaaggaggcgcaggcgggcggcagtgcccccaaggccgcg
tcctccgccgccggagccgccgacaccgccgaggccaagccgaagcgccgcgccaccagc
aaggcccgtacgggtgaggccgccgccgaggcgcccgccgagaagcctgccgcgcaggcc
cagatcgagatcccgggccagccggccgggggcccctcccgttcgagcgcagccgagagc
gggggagaggacgcgccggtcggcgagcgccgtcgtcgtcgtgccaccgccccgtccggc
agcccggaggcctcggcccccgccgccgtacaggtcgagcagaagaccgagaccgtcaag
gccgaggccgccgcgcagcccgaggcgaaggccgaggcggccacggccgtctccggtcag
gcgcagggccaggacggcgagggccgcggccgtcgcgagcgccgcgaccgcggtgaccgt
gccgagcgcggtgaccgccagcgtgaccgtcgcgaccgcggtgccaaggccgacgagccg
ggccagggtgcgccggccggccagggcggtcagggcgggggccgtcaggaccgcgccgac
cgtcaggaccgccagcagcagggcggccgtggtcagggccagagccagggtcagggtcag
cagggccgtcaggaccggcaggaccgtcagggtccccaggacaacggtccgcaggacgac
ttcgacgacgagggcggccgtcgtggccgccggggccgttaccgcgaccgccgtggccgt
cgtggccgcgacgagttcgccccgaacgagccgcaggtcgccgacgacgacgtcctgatc
cccgtcgcgggcatcctcgacatcctcgacaactacgcgttcatccggacctcgggctac
ctgcccggtcccaacgacgtgtacgtctccctcgcccaggtccgcaaggcgggtctgcgc
aagggtgaccacaccaccggtgccgtgcgccagcccaaggacggcgagcgccgcgagaag
ttcaacgccctcgtgcggctggactccgtgaacggcatggcgcccgaatcgggccgcggg
cggccggagttccagaagctgacgcccctgtacccgcaggaccggctccgtctggagacc
gacccgggcgtgctgaccacccgcatcatcgacctcgtgtcgccgatcggcaagggccag
cgcggtctgatcgtggccccgccgaagaccggtaagaccatgatcatgcaggcgatcgcc
aacgcgatcaccaccaacaaccccgagtgccacctgatggtcgtcctggtcgacgagcgt
ccggaagaggtcaccgacatgcagcggtcggtcaagggcgaggtcatctcctcgaccttc
gaccgcccggccgaggaccacaccaccgtcgccgagctggccatcgagcgcgccaagcgt
ctcgtcgagctcggccacgacgtggtcgtcctgctggactccatcacccgtctgggccgc
gcgtacaacctcgcggctcccgcctccggccgcatcctgtccggtggtgtcgactcgacc
gcgctgtacccgccgaagcgcttcttcggtgccgcgcgcaacatcgaggacggcggctcg
ctgaccatcctggccaccgcgctggtcgacaccggctcgcgcatggacgaggtgatcttc
gaggagttcaagggcaccggcaacatggagctcaagctcgaccggaagctcgccgacaag
cgcatcttcccggccgtcgacgtcgacccgtcgggcacccgcaaggaggagatcctcctc
aacgcggaggagctcgccatcgtctggaagctgcgccgggtgctgcacgcgctcgactcg
cagcaggcgatcgagctgctgctcgacaagatgaagcagacgaagtcgaacgccgagttc
ctgatgcagatcgcgaagacgacgccgtcgggcaagaacgacgactga
DBGET
integrated database retrieval system
