Staphylococcus xylosus HKUOPL8: BE24_07080
Help
Entry
BE24_07080 CDS
T03248
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sxy
Staphylococcus xylosus HKUOPL8
Pathway
sxy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BE24_07080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sxy03400
]
BE24_07080
Enzymes [BR:
sxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BE24_07080
DNA repair and recombination proteins [BR:
sxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BE24_07080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
Glyco_hydro_115
UB2H
RecG_dom3_C
IstB_IS21
DUF3105
DUF1421
Motif
Other DBs
NCBI-ProteinID:
AID01803
LinkDB
All DBs
Position
complement(1400191..1403703)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKSIITEYINEDKRYQELNEVFGKEQVLVTGLSGAAKATIIAEKYLNSSKQLLIVTNNLY
QADKLESDLTQFVEEQDIYKYPMQDIMTEEFSTQSPQFMSERVRTLTALAQEKRGLFIVP
LNGLKKWLTPVEMWKSHQLTLSVGDDIDIDDFLNKLVNMGYRRESVVSHIGEFSLRGGII
DIYPLIGSPVRIELFDTEVDSIRDFDVETQRSQENVEEVNITTASDYIITEDVLNHTKQK
LKEAYEYTRPKIDKAVRNELKETYESFQLFESSMFDHQVLRRLVAFMYQQPTTIIDYFKD
DAIVAVDEYNRIKETETALISEADEFMQNLIESGKGFIDQSFLQYDAFENQLKSYPVTYF
TLFTATMSVELNEIIKFSCKPVQQFYGQYDIMRSEFQRFIQNDYTVVVLAETEVKKERIQ
SMLNEMHIPTFIDTPTHRNEGGSAIITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPK
QQKTLTNAEKIKSYQDLKVGDYIVHVHHGVGRYLGVETLEVGGVHKDYIKLQYKGTDQLF
VPVDQMDQVQKYVASEDKTPRLNKLGGSEWKKTKAKVQQSVEDMADELIELYKAREMSVG
YQFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKKDMEIERPMDRLLCGDVGYGKTEVAVR
AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPIEVQLISRFRTAKEIKKTKEGLE
SGFVDIIVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQ
SIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNA
NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVTDEKQDAPEVE
IELNIDAYLPAEYIQNEQAKIEIYKKLRKIETEAQLMDVKDELIDRFNDYPVEVERLLEM
MEIKVHALHAGVTLIKDIGKKVEIYLSEKGTTDINGETLFKQTQPLGRSMKVGVQDGKMK
VTLNKTSTWFDNLKFLAKCLEESMVISDES
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatcaataattacagaatatataaatgaagataaacgttatcaggaattaaacgaa
gtatttggaaaagagcaggtgctggttacgggtttatcgggtgctgctaaagcaacgata
atcgctgaaaaatatttgaatagttctaaacaattactaattgtaacaaacaatctttat
caagcagataaattagaaagtgatttaacgcagtttgtggaagaacaagatatttataag
tacccaatgcaagatattatgacagaagaattttcaacacaaagccctcaatttatgagt
gaacgtgtgcgcacattaacggcgcttgctcaagaaaagagaggtttatttatcgtcccg
cttaacggactgaagaaatggttgacccctgtagaaatgtggaaatcacatcaattaaca
ttgagtgtaggggatgatatagatattgatgatttcttaaataagttagttaatatgggt
tatcgtagagaaagtgttgtttctcatataggcgagttttctttacgaggcggtattatt
gatatttatccactaattggtagtccggttagaattgaactttttgatacagaagtagat
tcaattcgtgattttgatgtagaaacccaaagatcacaggaaaacgttgaagaggtaaac
atcactactgcgagcgattatataataacagaagatgtgcttaatcacacaaagcaaaaa
ctcaaagaagcatatgaatatacaagaccaaaaattgataaagcggtccgtaatgaatta
aaagaaacgtatgaaagctttcagttattcgaatcatctatgtttgatcatcaagtatta
cgccgtcttgtcgcttttatgtatcaacagcctactacaattatcgattactttaaggat
gacgcaattgtagcggtagatgaatataacagaattaaagaaactgaaacggcacttatt
tcagaagcggatgagtttatgcaaaatttgattgaaagcggtaaagggtttattgatcaa
agcttcttgcaatacgatgcttttgaaaaccaactaaagtcatatccggtgacatatttc
acattatttacagcgacaatgtctgttgagttaaacgaaattattaaattttcatgtaag
cctgtgcaacagttttatggacaatacgatattatgcgttcagaatttcaacgatttatt
caaaatgattatacggttgttgtacttgctgaaacagaagtcaaaaaagaacgtatacaa
tcaatgctcaatgaaatgcatataccaacatttattgatacgcctacgcaccgcaatgaa
ggtggaagcgcgattattactgaaggtagtttatcagaaggctttgaattgccgtatatg
caattagttgttgtcacagagagagaattatttaaatcaaaacaaaagaaaaaaccgaaa
caacaaaaaactttaacaaacgccgaaaaaattaaatcttatcaagatttaaaagtaggt
gattatattgtacatgttcatcacggggtaggcagatacctaggtgtagagacgctagaa
gttggtggtgtacataaagattatattaaacttcaatataaagggacagatcaattattc
gtacctgtagaccaaatggaccaagttcaaaaatatgtggcatcagaagataaaacgcct
aggttaaataaacttggtggctcagagtggaaaaaaaccaaagcgaaagttcaacaaagt
gttgaagatatggcagatgaattaatagaattatataaagcacgtgaaatgtctgttggt
tatcaatttggtcctgatacagctgaacaaaatgattttgaaattgactttccttatgag
cttactcctgaccaaagtaagtcgattgaagagattaaaaaggatatggaaattgaacgt
cctatggatagattgctgtgtggagatgttggttacggtaagactgaggttgctgtaaga
gcagcgtttaaagcagtaatggaaggtaaacaagttgcctttttagtaccgacaactata
ttagcacaacagcactatgaaacattaatcgaacgcatgcaagacttcccaatagaagta
cagttaattagtaggtttagaactgcaaaagaaattaaaaaaactaaagaaggtttggaa
tcaggttttgtcgatattattgtaggtacacataaattattggggaaagatattcattat
aaagatttgggattacttattgtagatgaagaacaacgatttggtgtacgacataaagaa
cgaatcaaatctttaaaaaataatgtggatgtgcttacattaacagctacaccaatccca
cgtactttgcacatgagtatgctaggcgtgcgtgatttatctgttattgaaacaccacca
gagaaccgttttccagtgcaaacatacgtattagagcagaacactaattttattaaagaa
gcattagaaagagaattatcaagagatggtcaggtgttttatttatacaataaagtgcag
tctatttatgagaaaagagagcaattacaaatgcttatgccagatgccaacataggtgtt
gcacatggacaaatgaatgaaagggacttagaagaaacaatgctaagttttatcaatcat
gaatatgacatcattgttactacgactattattgaaacgggcgtagatgttccaaatgcg
aatactttaattatagaagatgctgaccgctttggattaagtcaactttatcaattaaga
ggtcgtgtaggtcgttcaagccgtattggctatgcgtacttcttacatcctacgaataaa
gtactttctgaaactgccgaagatcgtttacaagcaattaaagaatttactgaattaggt
tcaggtttcaaaattgcgatgcgtgatttaaacattcgtggtgctggtaatttattaggt
aaacaacaacatggctttatagattcagtaggctttgacttatattctcaaatgctagaa
gaagcggtaaatgaaaaacgcggcgtgacagatgaaaaacaagacgctccagaagttgag
attgaacttaacatagatgcatacttaccagcagagtacattcaaaatgagcaggctaaa
atagaaatttataagaaattacgtaaaattgagacggaagcacaactaatggacgttaaa
gatgagttaattgaccgctttaatgattatcctgttgaagttgaaagacttctagaaatg
atggaaattaaagtacatgcattgcatgctggtgtaaccttgatcaaggatattggtaaa
aaagtagaaatttatttatctgaaaagggtacgacagacattaatggcgaaacattattt
aaacaaactcaaccattaggacgctcaatgaaagtaggcgttcaagatggtaaaatgaaa
gtgacattaaataaaacaagtacttggtttgataatttgaaattcctagcaaaatgttta
gaagaaagtatggttatctctgatgaaagctaa
DBGET
integrated database retrieval system
