Sphingobium yanoikuyae: A6768_03850
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Entry
A6768_03850 CDS
T05170
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sya
Sphingobium yanoikuyae
Pathway
sya02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A6768_03850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sya03021
]
A6768_03850
Transcription machinery [BR:
sya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A6768_03850
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
HTH_29
DUF4168
TniQ
Motif
Other DBs
NCBI-ProteinID:
ATI79233
LinkDB
All DBs
Position
complement(821052..823091)
Genome browser
AA seq
679 aa
AA seq
DB search
MATKANSKNGGMGDGEDGDAPLLDLNEASVKKLIARANKRGYITYDELNDALPQDQMSSE
QIEDIMSALNEMGVNIVENEEASEDGDEQREREEADDADDDSSDDDGPKLVTEKKKETVD
RTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALN
NGEMQLREILDLDAMLSKDPAPENMEEGAEDDDGEISEKTAGPSFKEEEEPEEESADGDE
DEDGAPRARREEDEEEDNTLSLAQMEETLKPMALEKFATITEIFRAFSKAQESRMVAMAN
GESLSQKAEDSYHELREQLTAEVESVQFHQQKIEYLVDQLYAYNRRLTALGGQMLRLAER
HKVSRKDFLERYMGHELDDAWLEKVQGLDKKWAAFAAAEGRAVERIRNEVSEIAQATGMS
LSEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQ
GREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDA
AIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKA
LRKLKHPSRSRKMRSFLDQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggcgaacagcaagaatggcgggatgggcgatggcgaggatggcgatgcc
cccctgctcgacctcaacgaagcgtccgtcaagaagctgatcgcccgcgcgaataagcgc
ggctacatcacctatgacgaactgaacgacgccctgccgcaggaccagatgtcctccgag
cagatcgaggacatcatgtcggcgctcaacgaaatgggcgtcaacatcgtcgagaatgaa
gaggcgagcgaagacggcgacgagcagcgcgagcgcgaggaagccgacgacgccgacgat
gattcgagcgacgatgacggccccaaactcgtcaccgagaagaagaaggaaacggtcgat
cgcaccgacgatcccgtgcgcatgtatctgcgcgagatgggcgccgtcgaactgctcagc
cgcgagggcgaaatcgccattgccaagcgcatcgaggccggtcgcgacacgatgatcctg
ggtctgtgcgaaagcccgaccaccttcaacgcgatcatcgaatggtcgaccgcgctcaac
aatggcgagatgcagctgcgcgagattctcgatctcgacgccatgctgtccaaggatcct
gctcctgaaaatatggaggaaggcgccgaggatgatgatggcgagatcagcgagaagacc
gctggtcccagcttcaaggaagaggaagagccggaggaggaatccgccgacggcgacgag
gacgaggatggtgcaccccgcgcccgtcgcgaggaggacgaggaagaggacaacaccctg
tccctcgcccagatggaagaaaccttgaagccgatggcgctggagaagttcgcgaccatc
accgaaatcttccgcgctttctccaaggcccaggaatcgcggatggtcgccatggccaat
ggcgagagcctgagccagaaggccgaggacagctatcatgagctgcgcgagcagctgacc
gccgaggtcgagagcgtccagttccaccagcagaagatcgaatatctggtcgaccagctc
tatgcctataaccggcgcctgaccgcgctgggtggccagatgctgcgtctggccgagcgc
cacaaggtgagccgcaaggacttccttgagcgctatatgggccatgaactggacgatgcc
tggctggagaaggtgcagggcctcgacaagaaatgggctgcctttgccgctgccgaaggc
cgcgcggtcgagcgcatccgtaacgaggtgagcgagatcgctcaggcgaccggcatgtcg
ctcagcgaattccgccgcatcgtgaacatggtgcagaagggcgagcgcgaggcccgcatc
gcgaagaaggaaatggtcgaggcgaacctgcgcctcgtcatctccatcgcgaagaagtac
acgaaccgcggccttcagttcctggaccttatccaggaaggcaatatcggcctgatgaag
gcggtcgataagttcgaatatcgccgcggctacaagttcagcacctacgccacctggtgg
atccgtcaggcgatcacccgttcgatcgcggaccaggcgcggaccatccgtatcccggtc
cacatgatcgagacgatcaacaagctggtccgcaccagccgccagttcctgcacgagcag
ggccgcgagccgaccccggaagagatggccgaacgcctgtccatgccgctggagaaggtg
cgcaaggtgatgaagattgccaaggagccgatctcgctcgaaacgccgatcggcgacgag
gaagacagccacctcggcgacttcatcgaagacaagaatgcgatcatcccggtggatgcg
gcgatccaggcgaacctcaaggaaacggtcacccgcgtccttgccagcctgaccccgcgc
gaggaacgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccatacgctggag
gaagtgggccagcagttcagcgtgacccgcgagcgtatccgccagatcgaggcgaaggcg
ctgcgcaagctgaagcaccccagccgcagccgcaagatgcgcagtttcctggaccagtaa
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