Sphingobium yanoikuyae: A6768_05220
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Entry
A6768_05220 CDS
T05170
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
sya
Sphingobium yanoikuyae
Pathway
sya00300
Lysine biosynthesis
sya00470
D-Amino acid metabolism
sya01100
Metabolic pathways
sya01110
Biosynthesis of secondary metabolites
sya01120
Microbial metabolism in diverse environments
sya01230
Biosynthesis of amino acids
Module
sya_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
A6768_05220
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
A6768_05220
Enzymes [BR:
sya01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
A6768_05220
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ATI79482
UniProt:
A0A291MWL9
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All DBs
Position
1109396..1110628
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AA seq
410 aa
AA seq
DB search
MKPMGPIPAWFAEEEGMLLIGGCGAASLVDEAGDTPLFVYDMGIIEAQVRRFREAIPKRI
DLHYAIKANPYAPLLARMAGLVDGFDIASGGELAMALEAGMDPARISFAGPGKRNDELEA
AIHAGITINLESEGEGARALTVAERLGKVPRLAVRVNPDFDLKGSGMRMGGGAKPFGVDA
DRAAALARAMIDAGADWRGWHIFAGSQALDPMAIIETQAATIDLAARLSDAVGAAPPLVN
LGGGFGIPYFPGDERLDIRPIGVALDTALNALPDILADSAFAIELGRWLVGEAGIYLTRV
VDVKQSQGETFVVVDGGLHHQLAASGNFGTVVRRNYPIAVANRFGREPTTQPVNVVGCLC
TPIDRLGEKVALPPVDVGDFIAIFLAGAYGASASPAAFLGHPSPRELLLG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccatgggccccattcccgcctggtttgccgaggaagaaggtatgctgctgatc
ggcggctgcggcgcggccagcctggtcgacgaagcgggcgacacgccgctgttcgtctat
gacatggggatcatcgaggcgcaggtgcgtcgcttccgcgaggcgatccccaagcggatc
gaccttcattatgcgatcaaggccaacccctatgcgccgctgctggcgcgcatggcgggg
ctggtcgacggtttcgacatcgcctcgggcggcgaactggcgatggcgctggaggccggc
atggacccggcgcggatcagctttgccgggccgggcaagcgcaatgacgaattggaagcc
gccatccatgccggcatcaccatcaatctggagtccgagggggagggcgcgcgcgcgctg
accgtggcggagcgcctggggaaggtgccgcgcctcgccgtgcgggtgaacccggatttc
gatctcaaagggtccggcatgcgcatgggcggcggcgccaagcccttcggcgtcgatgcc
gatcgcgcggccgcgctggcgcgcgcgatgatcgatgccggcgcggactggcgcggctgg
catatcttcgccggcagccaggcgcttgatcccatggcgatcatcgagacccaggcggcg
accatcgaccttgccgcgcgcctgtccgatgcggtcggcgctgcgccgccgctcgtcaat
ctgggtggcggtttcggcattccctatttccccggtgacgagcggctggatatccgcccg
atcggggtcgcgctcgacaccgcgctcaacgcgctgcccgacatcctggccgacagcgca
ttcgcgatcgagctgggccgctggctggtgggggaggctggcatctatctgacccgtgtg
gtcgatgtgaagcagagccagggcgaaacctttgtcgtcgtggatggcggcctgcatcat
caactggccgccagcggcaatttcggcacggtcgtgcggcgcaactatccgatcgcggtg
gccaaccgcttcgggcgcgagccgaccacccagccggtcaatgtcgtcggctgcctttgc
acgccgatcgaccggctgggcgaaaaggtcgcgttgccgccagtcgatgtcggcgatttc
atcgcgatcttccttgccggtgcctatggcgcgtcggcaagtcccgcggcctttcttggc
cacccaagtcctcgtgaactattacttggctaa
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