Sphingobium yanoikuyae: A6768_09005
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Entry
A6768_09005 CDS
T05170
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sya
Sphingobium yanoikuyae
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sya03032
]
A6768_09005
03400 DNA repair and recombination proteins [BR:
sya03400
]
A6768_09005
Enzymes [BR:
sya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
A6768_09005
DNA replication proteins [BR:
sya03032
]
Prokaryotic type
DNA Topoisomerases
A6768_09005
DNA repair and recombination proteins [BR:
sya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
A6768_09005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
DUF7343
Poly_export
Motif
Other DBs
NCBI-ProteinID:
ATI80133
UniProt:
A0A0J9FUI1
LinkDB
All DBs
Position
complement(1955477..1958059)
Genome browser
AA seq
860 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPPKDGSVDPDNGFAMSWENYGDKGK
QLKAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQTVDRVTFNAITKAAVL
DAMAKPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIESFVPQEYWSISAEMEQGGQGFTARLVRWKGEKIDRLTIGKEGDAMAAKADVEAGRF
TVDKVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARKAIAERYDGGYLPEKPRQYQTKAKNAQEAHEAIRPTEFHRDKVGGGDHAR
LYDLIFKRALASQMASARLERTTIDMVDGSGSHTLRATGQVVIFPGFLALYEEGRDDAED
DDSKLLPRLSEGDAPAKKKVSAEQHFTQPPPRYSEASLVKKLEELGIGRPSTYASTLQVL
KDRDYVRVEKNRFFAEESGRLVTAFLERFFERYVSYDFTAGLEDELDEISGGRAQWQEVL
EAFWKDFKPKTAEIMEQKPSDITAELDKFLEPMLFPPKADGSNPRACPLCADGQLSLRGG
RFGAFIACSNYPECKYTRKFGQPGGSDGADTGPEILGQHPETGQDIVKKSGRFGPYIEMG
EGKEAKRGSIPKDLPDGEMTLDWAIKLLSLPREVGLHPETGLPIVANIGRFGPYLLHDGK
YGRLSSTAEIFEVGMNMAVAKLADAANKGGRGGSSREPLKVLGKHPRTEAEIKLMAGRYG
PYVTDGTTNATLPKTIEQDALTLEEAAQLIDARAAAAPAKKGKKAPAKKAAAKKPAAKKE
AGEKKPAAKKAPAKKKAAAE
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgcaacttgtcattgtcgaatcgccggccaaggcgaagaccatcgagaaatatctgggc
ggggatttccatgtcctggccagctacggccatatccgtgacctgccgcccaaggacgga
tcggtcgatcccgacaatggctttgccatgtcctgggaaaattatggcgacaagggcaag
cagctcaaggccatcgccgacgaggcgaagaaggccacgcgattgatcctggcgactgac
cctgatcgcgaaggggaagcgatcagctggcatgtgcaggaagtgctgcgcgccaagaag
gcgctgccgcaaacggtggaccgggtgacgttcaacgcgatcaccaaggcggcggtgctg
gacgcgatggccaagccgcgcgcgctggacgaggatctgatcgacgcctatcgggcgcgc
cgcgcgctcgactatctggtgggcttcaccctgtcgccggtgctgtggcgcaagctgccc
ggcgccaagtcggccggccgcgtccagtcggtcgcgctgcgcctggtggtggagcgcgag
cgcgagatcgaaagcttcgtgccgcaggaatattggtcgatctcggccgagatggagcag
ggcgggcagggcttcaccgcgcgcctcgtccgctggaagggcgagaagatcgaccgcctg
accatcggcaaggaaggcgatgccatggccgcgaaggcggacgtggaggccgggcgcttc
accgtcgacaaggtcgagaccaagccgctcacccgcaatcccccgccgcccttcaccacc
tcgaccctgcagcaggaagccgcgcgcaagctcggcttttcggccagtcacacgatgcgg
atcgcgcagcagctctacgaggatggcgcgatcacctatatgcgtaccgacggcgtgcag
atggacggcagcgccatctcggccgcgcgcaaggcgatcgcggagcgctatgacggcggc
tatctgcccgaaaagccacgccaatatcagaccaaggcgaagaatgcgcaggaagcgcac
gaagccatccgcccgaccgaattccatcgtgacaaggtgggcggcggcgatcatgcgcgc
ctctacgacctgatcttcaagcgcgcgctggcgagccagatggcctcggctcggctggaa
cgcacaaccatcgacatggtcgacggcagcggcagccatacgttgcgcgccaccggtcag
gtggtgatcttccccggtttcctcgccctttacgaagaaggtcgcgacgatgccgaggat
gacgacagcaagctgctgccgcgcctgagcgaaggcgacgcgccggccaagaagaaggtg
agcgccgaacagcatttcacccagccgccgccgcgctattccgaagcctcgctggtcaag
aagctggaagagctgggcatcggtcgcccgtcgacctacgcctcgaccctgcaggttctg
aaggaccgcgactatgtccgcgtcgagaagaaccgcttcttcgccgaggaaagcgggcgg
ctggtgacggccttcctggagcgcttcttcgaacgctatgtctcctatgatttcaccgcg
ggcctggaagacgagctggacgagatttccggcggccgcgcccagtggcaggaggtgctc
gaagccttctggaaggacttcaagcccaagaccgccgagatcatggagcagaagccgtcc
gacatcacggccgagctggacaagttcctggagccgatgctgttcccgcccaaggcggac
ggcagcaatccgcgcgcctgcccgctgtgcgccgatggccaattgtcgctgcgcggcggc
cgctttggcgcgttcatcgcctgctccaactatcccgagtgcaaatatacccgcaagttc
ggccagcccggcggcagcgatggcgcggataccggccccgaaatcctcggccagcatccc
gagaccgggcaggacatcgtcaagaagtccggccgtttcggcccctatatcgagatgggc
gagggcaaggaggccaagcgtgggtcgatccccaaggatctgcccgatggcgagatgacg
ctcgactgggcgatcaagctgctgagcctgccgcgcgaagtcggcctgcacccggaaacc
ggcctgccgatcgtcgccaatatcggtcgctttggtccctatctgctgcatgacggcaaa
tatggccgcctgtcctcgaccgccgagattttcgaggtgggcatgaacatggccgttgcc
aagctcgccgatgcggcgaacaagggcgggcgtggcggttcgtcgcgtgagccgttgaag
gtgctgggcaagcatccgcgcaccgaggcggagatcaagctgatggcgggccgctatggc
ccctatgtcaccgacggcacgaccaacgcgaccctgcccaagacgatcgagcaggacgcg
ctgacgctggaggaggcggcccagctgatcgacgcgcgcgcggcggccgccccggccaag
aagggcaagaaggcaccggcgaagaaggcggccgccaagaagccggcggcgaagaaggaa
gcgggcgagaagaagcccgccgccaagaaggcaccggccaagaagaaggcggcggcggaa
taa
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