KEGG   Sphingobium yanoikuyae: A6768_10095
Entry
A6768_10095       CDS       T05170                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sya  Sphingobium yanoikuyae
Pathway
sya03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sya00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A6768_10095
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sya03019]
    A6768_10095
   03016 Transfer RNA biogenesis [BR:sya03016]
    A6768_10095
Enzymes [BR:sya01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A6768_10095
Messenger RNA biogenesis [BR:sya03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A6768_10095
Transfer RNA biogenesis [BR:sya03016]
 Prokaryotic type
  tRNA degradation factors
   A6768_10095
SSDB
Motif
Pfam: RNB CSD2 S1 RNase_II_C_S1 PF0610-like_N WHD_RNase_R OB_RNR_1st
Other DBs
NCBI-ProteinID: ATI80319
UniProt: A0A291MYY8
LinkDB
Position
2182419..2184833
AA seq 804 aa
MASTQKQKKAAPARAKVRPAGFPTRQQVMDFITESDTPAGKREIAKAFGLKGQEKIALKA
LLKDMADEGLLDIGPARAFHKMGGVPKVTVLRIVDVDDTTLIATPERWEAEGQPAPRIRV
VERGKRGALTIGDRILARTEEAGKGWLAHPMKKLAKATEMLLGVVEEMADGKLWLRPVDK
RIRKDTPISDIGTAKKGDLVLAEPTGRPPRISARVTDILGDPFAPRSFSLIAIHKHGIPH
VFPEAVEEEAVTASKLPLHEDKREDLRHLPIVAIDPVDARDHDDAVWAAPDEDPANEGGY
KAIVAIADVSYYVRPGSALDREARKRGNSVYFPDLVVPMLPHQLSSDMCSLRAGQDRAAM
ACHLVIDAQGKVKSFRFSRALIRVAAVLAYENAQAAIDALSSVRPEPVEGQGRAAGEAAS
PAAQQAASTSLSPNGVDLVEHALKPLWACWALLRKAREKRDPLALDLPERRVVLDEWGKI
VSVAVRERLDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHETPGRDKLVALKEYLATF
DIDFALGQVIRPSTFNQLIKKVGESEEKEQIMTQILRSQTQAYYAPQNMGHFGLALGSYA
HFTSPIRRYADLLVHRALVGAYDLELPAPKDKAIPDRSSLSQEDYENMGRVGEMISGHER
RAMEAERETIDRYVAAFLSAHVGEVVKARITGVQNFGFFATVEGLGGDGLVPVSTLGAEH
FFFDEAGKALQGVESGDRYTVGQRLELRLAEADPINGALRFELPDNPSPRGSPLKRDRTR
PKIHRGRPTNIRHIGSGRGKHKKR
NT seq 2415 nt   +upstreamnt  +downstreamnt
atggcatcgacccagaagcagaagaaggcggccccggcccgcgcgaaagtccgtcccgcc
gggttccccacccggcagcaggtgatggacttcatcaccgagtccgacaccccggccggc
aagcgcgaaatcgccaaggcgttcggcctcaaagggcaggaaaagatcgccttgaaggcg
ctgctcaaggacatggcggacgagggcctgctcgacatcggaccggcccgcgccttccac
aagatgggcggcgtgcccaaggtgacggtgctgcgcatcgtcgatgtcgacgacactacc
ctgatcgccacccccgaacgctgggaggccgagggccagcccgcgccccgcatccgcgtg
gtcgagcggggcaaacgcggcgcgctgacgatcggcgaccgcatcctcgcccgcaccgag
gaagcgggcaagggctggctcgcccatccgatgaagaagctcgccaaggcgaccgagatg
ctgctcggcgtggtcgaggaaatggccgacggcaagctgtggctgcgcccggtcgacaag
cgtatccgcaaggatacgccgatcagcgacatcggcaccgcgaagaagggcgacctggtc
ctggctgagccgaccggccgcccgccacggatcagcgcgcgcgtcaccgacattctgggc
gatcccttcgccccgcgcagcttcagcctgatcgcgatccacaaacatggcatcccccat
gtcttccccgaagcggtggaggaggaagcggtcaccgcgtcgaagctgccgctgcatgag
gacaagcgcgaggatctgcgccatctgccgatcgtcgcgatcgacccggtcgatgcccgc
gaccatgatgacgccgtctgggccgcgccggacgaagacccggccaatgaaggcggctac
aaggcgatcgtcgcgatcgccgatgtcagctactatgtccgccccggcagcgcgctcgac
cgcgaagcgcgcaagcgcggcaacagcgtctatttccccgacctggtcgtgccgatgctg
ccgcaccagctctcgtccgacatgtgttcgctgcgcgccgggcaggaccgcgccgccatg
gcctgccatctggtgatcgacgcgcagggcaaggtaaagagcttccgcttctcccgcgcc
ctcatccgcgtcgccgccgtcctcgcctatgaaaatgcgcaggccgcaatcgatgctctt
tcttccgttcgccctgagcctgtcgaagggcagggccgagccgcaggcgaggctgcttcg
cctgcggctcagcaagcggcttcgacttcgctcagcccgaacggggtggatctggtggaa
catgccctcaagccgctctgggcctgctgggcgctgctgcgcaaggcccgcgaaaagcgc
gatccgcttgcgctcgacctgcccgaacggcgcgtcgtcctcgacgaatggggcaagatc
gtcagcgtcgcggtgcgcgaacggctcgacgcccatatgctgatcgaggattatatgatc
gccgccaacgtcgccgccgccaaggcgctggaggcgaagaaggcgccggtcatgtaccgc
gtccatgaaacgccgggccgcgacaagctggtcgcgctcaaggaatatctcgccaccttc
gacatcgacttcgcgctgggccaggtgatccgcccgtccaccttcaaccagctgatcaag
aaggtcggcgagtcggaggagaaggagcagatcatgacccagatcctgcgctcccagacc
caggcctattatgcgccgcagaatatgggccatttcggcctggcgctgggcagctacgcc
catttcacctcgcccatccgccgctatgccgaccttctggtccatcgcgcgctggtcggc
gcctatgatctcgaactgcccgcgcccaaggacaaggcgatccccgaccgctcctccctc
agccaggaggattatgagaatatgggccgggtcggcgagatgatctcgggccatgaacgc
cgcgcgatggaggcggagcgcgagacaatcgaccgctatgtcgccgccttcctgtcggcc
catgtcggcgaggtggtgaaggcgcggatcaccggggtccagaatttcggcttcttcgcc
acggtcgaggggctgggcggcgacggcctcgtgcccgtatcgacgctgggcgccgaacat
ttcttcttcgacgaagcgggcaaggcgctgcagggcgtcgaaagcggcgaccgctatacg
gtcggccagcggctggaactgcgtctcgccgaagccgatccgatcaacggcgcgctgcgc
ttcgagctgcccgacaatccttccccgcgcggcagtccgctgaaacgcgaccgcacccgc
ccgaaaatccaccgcggccgccccaccaacatccgccacatcggcagcggccggggcaag
cacaagaaacggtaa

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