Sphingobium yanoikuyae: A6768_10745
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Entry
A6768_10745 CDS
T05170
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sya
Sphingobium yanoikuyae
Pathway
sya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6768_10745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sya03019
]
A6768_10745
Enzymes [BR:
sya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A6768_10745
Messenger RNA biogenesis [BR:
sya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6768_10745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ChuX_HutX
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ATI80429
UniProt:
A0A291MZ99
LinkDB
All DBs
Position
complement(2327590..2329020)
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AA seq
476 aa
AA seq
DB search
MHFNELGLSEPIIKALTAKKYAEPTPIQQKAIPVLLEGRDLCGIAQTGTGKTAAFALPSL
DYFARNPKPTPIKGCRMLVLSPTRELAAQIAQSFRDYGRFLRLSVETVFGGVPVNKQIRA
LSAGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR
QNLFFSATMPKEIEALAGQFLNDPVKVSVAPQSTTAERVRQQLTFVNQAEKQALLHIVLK
TEEIDRALIFTRTKHGADRVVRFLEGAGIQAFAIHGNKSQAQRTTALQAFRHGHCKLLVA
TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGADGIAISFVADDERPYLKAIE
RATKVKPEIVPLPENFLEAVRNLSKPAPQRKGPSQSPAQQAKRAEGQRRYQEGQKAQRGA
PDKARRGEGGHRGEGAHRGEGDGAGAKKNFRRRRGGGGGAVGTHKGAVQRTGAPRG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcaatgaacttggtctttccgagccgatcatcaaggcgcttaccgccaagaaa
tatgccgagccgacgccgatccagcaaaaggccattccggtcctgctggaaggccgcgac
ctgtgcggcatcgcccagaccggcaccggcaagaccgcagccttcgcgctgcccagcctc
gactatttcgcgcgcaaccccaagccgacgccgatcaagggctgtcgcatgctggtgctg
tcgccgacccgcgagctggccgcccagatcgcccagagcttccgcgactatggccgcttc
ctgcgcctgtcggtggaaaccgtgttcggcggcgtgccggtcaacaagcagatccgtgcc
ctgtcggccggcgtcgacatcgtcgtcgccacccccggccgcctgctcgacctgatcgac
cagcgcgccttcaccatcaaggacacggaaatcttcgtcctcgacgaggccgaccagatg
atggacatgggcttcatccacccgctgaagcgcatcgccaagctgttgccgcgcgatcgc
cagaacctgttcttctcggccaccatgcccaaggagatcgaggcactggccggccagttc
ctcaatgatccggtcaaggtcagcgtcgcgccgcagtcgaccacggccgagcgcgttcgc
cagcagctgaccttcgtcaaccaggcggagaagcaggcgctgctgcacatcgtgctgaag
accgaggagatcgaccgcgcgctgatcttcacccgcaccaagcatggcgccgaccgcgtc
gtgcgtttcctggagggcgcgggcatccaggccttcgcgatccatggcaacaagagccag
gcgcagcgcaccaccgcgctgcaggcgttccgtcatggccattgcaagctgctggtcgcg
accgacatcgccgcgcgcggcatcgacgtgtcgggcgtgtcccacgtcatcaactttgaa
atcccgaatgtgccggaacaatatgtccaccgcatcggccggacggcgcgcgccggcgcg
gacggcatcgccatcagcttcgtggcggatgatgaacggccttatctgaaggcgatcgag
cgggcgaccaaggtgaagcccgagatcgtgcccctgccggagaatttcctggaggccgtg
cgcaacctttccaagcccgcgccgcagcgcaaggggccgagccagagcccggcccagcag
gctaagcgtgccgaaggccagcgtcgctatcaggaagggcagaaggcccagcgcggcgcg
cccgacaaggctcgccgtggtgaagggggacatcgtggcgagggcgcgcatcgtggcgaa
ggcgatggtgccggcgccaagaagaatttccgtcgtcgtcgtggcggcggcggtggcgcc
gtcggcacgcacaagggcgcggtccagcgtaccggcgcaccgcgcggctaa
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