Sphingobium yanoikuyae: A6768_14750
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Entry
A6768_14750 CDS
T05170
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sya
Sphingobium yanoikuyae
Pathway
sya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6768_14750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sya03019
]
A6768_14750
03009 Ribosome biogenesis [BR:
sya03009
]
A6768_14750
Enzymes [BR:
sya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A6768_14750
Messenger RNA biogenesis [BR:
sya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A6768_14750
Ribosome biogenesis [BR:
sya03009
]
Prokaryotic type
rRNA helicases
A6768_14750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
MutH
Motif
Other DBs
NCBI-ProteinID:
ATI83334
UniProt:
A0A084ERW7
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All DBs
Position
3205438..3207174
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AA seq
578 aa
AA seq
DB search
MSFEHLPSMLAQALTTKGYESLTPVQSEVTQDEAQGRDLLVSAQTGSGKTVAFGLAMAAE
LLTGGDKLPVAGLPLALVIAPTRELALQVSRELEWLYGAARARIATCVGGMDAAKERRAL
SHGAHIVVGTPGRLRDHLERGALDLSGMRTVVLDEADEMLDMGFREDLEGILDSAPEDRR
TLLFSATMPKPIVAMAKRYQSDALRISTVGEERGHGDISYQAVTVAPSDIENAVVNLLRY
HEAETAILFCATRDNVRHLHSSLTERGFAAVALSGEHSQNERNHALQALRDKRARVCVAT
DVAARGIDLPSLTLVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLR
GAKIPVEWGTPPSKEAILEQDNARLRSTLMEKAELDEADWALGAELLAEKSAKEIAAMLV
KSARASLPAPEELLDRSEAPPRQEGPRPGFEDTQWFRMDIGRRQNADPRWILPLICRRGH
VSRGDIGAIRITTNETMFEIPRAIASRFMSAVKRSGEANDEGADVAFEMIDGAPREQARD
NRRQGNRSNDRGPRPAGYAPRPFKGGPKRPGGPRKPRG
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaacatctcccctccatgctcgcccaggcgctgaccaccaagggctatgag
agcctgaccccggtccagtccgaagtgacgcaggacgaagcgcagggccgcgacctgctg
gtgtcggcacagaccggctcgggcaagaccgtcgccttcggcctggccatggccgccgaa
ctgctgaccggcggcgacaagctgcccgtcgccggcctgccgctggcgctggtgatcgcg
ccgacacgcgaactggcgctgcaggtcagccgcgagctggaatggctctatggcgccgcc
cgcgcccgcatcgccacctgcgtcggcggcatggacgccgccaaggaacgccgcgcactc
agccatggcgcccatatcgtcgtcggcacccccggccgcctgcgcgaccatctggaacgc
ggcgcgctggacctgtcgggaatgcgcaccgtcgtcctcgacgaagcggacgaaatgctc
gacatgggcttccgcgaggatctggaaggcatattggacagcgcgccggaagatcgccgc
accctgctcttctcggccaccatgcccaagccgatcgtcgcgatggccaagcgctatcag
tcggacgcgctgcgcatctcgaccgtgggcgaagaacgcggccatggcgacatcagctac
caggccgtcaccgtcgccccgtcggacatcgagaatgcggtggtcaacctgctgcgctat
catgaagccgaaaccgcgatcctgttctgcgccacccgcgacaatgtccgtcacctgcat
agcagcctgaccgagcgcggcttcgccgccgtggcgctgtcgggcgagcatagccagaat
gagcgcaaccacgccctccaggcgctgcgcgacaagcgcgcccgtgtctgcgtcgccacc
gacgtcgccgcacgcggcatcgacctgcccagcctgacgctggtggtccatgtcgaactg
ccgcgcgacgcggagacgatgcagcaccgttcgggccgcaccggtcgcgccggcaagaag
ggcaccgctgtcctgatcgtcccctatccgcgtcgccgccgcgtcgaatcgatgctgcgc
ggtgccaagattccggtcgaatggggcaccccgcccagcaaggaagcgatcctggagcag
gataatgcccgtctgcgttcgaccctgatggaaaaggccgagttggacgaggccgactgg
gcactgggcgccgaactgctggcggaaaagtcggccaaggaaattgccgcgatgctggtg
aagagcgcccgcgcctcactgcccgcgcccgaggaactgctggaccgcagcgaagcgccg
ccgcgccaggaaggtccgcgtccgggcttcgaggacacccagtggttccgcatggacatc
ggccgtcgccagaatgccgatccgcgctggatcctgccgctgatctgccgccgcggccat
gtgtcgcgcggcgacatcggcgcgatccgtatcaccaccaacgaaaccatgttcgaaatc
ccgcgcgcgatcgccagccgcttcatgtcggccgtcaagcgctcgggcgaggccaatgac
gagggtgcggacgtggcgttcgagatgatcgacggcgccccgcgcgagcaggcccgcgac
aatcgccgccagggcaatcgctcgaacgaccgtggtccgcgtccggccggctacgccccc
cgccccttcaagggcggacccaagcgtccgggcggcccgcgcaagccgcgcggctaa
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