KEGG   Sphingobium yanoikuyae: A6768_15820
Entry
A6768_15820       CDS       T05170                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
sya  Sphingobium yanoikuyae
Pathway
sya03030  DNA replication
sya03410  Base excision repair
sya03420  Nucleotide excision repair
sya03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sya00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A6768_15820
   03410 Base excision repair
    A6768_15820
   03420 Nucleotide excision repair
    A6768_15820
   03440 Homologous recombination
    A6768_15820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sya03032]
    A6768_15820
   03400 DNA repair and recombination proteins [BR:sya03400]
    A6768_15820
Enzymes [BR:sya01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     A6768_15820
DNA replication proteins [BR:sya03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A6768_15820
DNA repair and recombination proteins [BR:sya03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     A6768_15820
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A6768_15820
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DprA_N HHH_5 HAMP_N3 HHH IMS_HHH
Other DBs
NCBI-ProteinID: ATI81314
UniProt: A0A291N1M5
LinkDB
Position
3425955..3428753
AA seq 932 aa
MSQQNHLYLVDGSGYIFRAYHQLPPLTNQHGQPVGAVYGYTTMLWKLAEELGKAEGPTHL
AVVLDKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEAGYEADDII
ASYTQAAVRAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMGKFGVLPEQLGD
VLALMGDSVDNVPGVPGIGPKTAAKLITEYGTLEAALDAAPSMKKSKMQENLIAHADMAR
LSRRLVALHDSMDLPEPLDDLTLKGIPKEPLQAFLSHHGFKTLLNRLGAPAATVAVASAA
AATSGADAPPPPPVIEVEHPPIDCALYETVTTVEALQVWIDEARALGVVAVDTETDALDS
MESGLVGISLSTGPGRACYIPLAHRSADDMFGEVPQQIPLDDAIRLLKPLLADDAVLKVG
HNIKYDLNVLARVGLEVTPIDDSMVMSFDLDAGKSLGGHGMDEAASVHLNHTCISFKEVT
GTGKKAISFAHVPLDKATAYAAEDAEVTWRLWHKLSGRLPAEGATRVYQLVDRPLIPVVA
GMERQGIKVDREALSRLSGSFSQSIAGLEAEIHELAGHPFTIGSPQQLGVVLFDEMGLKG
GKKGKSGTYSTDVTVLEKLKAEGSAICGLVLEWRQLSKLKSTYTDALQQQINRDTGRVHT
SYSLTGAQTGRLSSTDPNLQNIPIRTEIGRQIRHAFVAEPGNVILAADYSQIELRLAAHM
ADVPALKDAFEQGEDIHNRTAMELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLEISA
DEAQDMISRYYERFPGISVYINETLEKARANGFTETLFGRKTWFPRIKAAVQHERQGAER
AAINAPIQGTSADIIKRAMARMGPALEAAGLPRVRMLLQVHDELVFELPEGDVEAASKVI
RQVMESAAEPMVTLSVPLGVEIGTGPSWGAAH
NT seq 2799 nt   +upstreamnt  +downstreamnt
atgtctcagcagaatcatctctatctggtcgacggcagcggctatatcttccgcgcctat
catcagcttccgccgctcaccaaccagcatggccagccggtcggcgcggtctatggctat
accaccatgctgtggaagctggccgaggagctgggcaaggcggaggggccgacccatctg
gccgtcgtgctggacaagggcagccacaccttccgcaacgacatgtacgatcagtataag
gcgaaccggccgcccgcgcccgaggatcttgtgccccagttcccgatgatccgcgacgcc
acccgcgccttctcgctcccctgcatcgaggaagccgggtatgaggcggacgacatcatc
gccagctacacccaggccgccgtgcgcgccggctggcatgtcaccatcgtcagttccgac
aaggatctgatgcagctcatccagcccggcgtcgacatgtacgacacgatgaagaatgag
cggcgcggcgccgactatgtcatgggcaagttcggcgtgctgcccgagcaactgggcgac
gtgctggcgctgatgggcgacagcgtcgacaatgtgccgggcgttccgggcatcggcccc
aagacggcggccaagctgatcaccgaatatggcacgctggaagcagcgctggacgcggcc
ccttcgatgaagaagtcgaagatgcaggaaaacctcatcgcccatgccgacatggcgcgc
ctgtcgcgccggctggtcgcgctgcatgacagcatggacctgcccgagccgctggacgac
ctgaccttgaagggcattcccaaggagccgttgcaggccttcctgtcgcatcatggcttc
aagaccctgctcaaccgcctcggcgcgccggccgctacggttgcggtcgccagcgcggcc
gctgcgaccagcggcgccgacgcgccaccgccgcccccggtaatcgaggtcgagcatccg
ccgatcgactgcgccctctatgaaaccgtcaccacggtcgaggcgctgcaggtctggatc
gacgaagcccgcgcgctcggcgtggtcgcggtcgataccgagaccgatgcgctcgacagc
atggaatcgggcctggtcggcatcagcctgtccaccgggccgggccgcgcctgctacatc
ccgctcgcccatcgctccgccgacgacatgttcggcgaagtgccgcagcagatcccgctc
gatgatgcgatccgattgctcaagcccctgctcgccgacgatgcggtgctcaaggtcggc
cataatatcaaatatgacctcaacgtcctcgcccgcgtcgggctggaggtgacgccgatc
gacgattcgatggtgatgagcttcgacctcgacgccggcaagtcgctgggcggccatggc
atggacgaggcggcaagcgtccacctcaaccacacatgcatcagtttcaaggaagtgacc
ggcaccggcaagaaggcgatcagcttcgcccatgtgccgctcgacaaggccaccgcctat
gccgccgaggatgccgaggtcacctggcgcctgtggcacaagctttcgggccgcctgcca
gccgagggcgcgacgcgggtctaccagctggtcgatcggccgctgatcccggtggttgcc
ggcatggagcggcagggtatcaaggtcgaccgcgaagccctgtcccgcctctcgggcagc
ttctcgcagtcgatcgccggccttgaagccgaaatccacgaactcgccggccatcccttc
accatcggatcgccgcagcagctgggcgtcgtgctgttcgatgaaatgggcctcaaaggc
ggcaagaagggcaagagcggcacctactccacggacgtcaccgtgctggagaagctcaag
gccgaaggctccgccatttgcgggctggtgctggaatggcgccagctctccaagcttaaa
tccacctataccgacgcgctgcagcagcagatcaaccgcgacaccggtcgggtccatacc
agctattcgctgaccggcgcccagaccggccgcctgtcctcgaccgatcccaatctgcag
aacatcccgatccgcaccgagatcggccggcagatccgccatgccttcgtcgccgaaccc
ggcaatgtcatcctggcggcggactatagccagatcgaactgcgcctggccgcgcacatg
gccgacgtgcccgcgctcaaggatgcgttcgaacagggcgaggatattcataaccgcacg
gccatggaattgttcggcgaggtcaatcgcgacacgcgcggccgcgccaagacgatcaac
ttcgcgatcctctacggcatttcgcgctggggcctggccggccggctggaaatcagcgcc
gacgaggcgcaggacatgatcagccgctattatgagcgcttccccggcatcagcgtctat
atcaacgagacactggaaaaggcgcgcgccaacggcttcaccgaaaccctgttcggccgc
aagacctggttcccgcgcatcaaggccgcggtccagcacgaacggcagggcgccgagcgc
gccgcgatcaacgcgccgatccagggcaccagcgccgacatcatcaagcgggcgatggcc
cgcatgggcccggcgctcgaagctgcgggcctgccgcgcgtgcgcatgctgctgcaggtg
catgacgaactggtgttcgagctgcccgaaggcgatgtcgaggccgccagcaaggtgatc
cgccaggtcatggaaagcgccgccgaaccgatggtgacgctcagcgtgccgctgggcgtg
gaaatcggcaccggcccgagctggggcgcggcgcattga

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