Sphingobium yanoikuyae: A6768_17685
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Entry
A6768_17685 CDS
T05170
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sya
Sphingobium yanoikuyae
Pathway
sya03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A6768_17685 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sya03021
]
A6768_17685 (rpoB)
03400 DNA repair and recombination proteins [BR:
sya03400
]
A6768_17685 (rpoB)
Enzymes [BR:
sya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A6768_17685 (rpoB)
Transcription machinery [BR:
sya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A6768_17685 (rpoB)
DNA repair and recombination proteins [BR:
sya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A6768_17685 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ATI81648
UniProt:
A0A0J9CU21
LinkDB
All DBs
Position
3835343..3839500
Genome browser
AA seq
1385 aa
AA seq
DB search
MATKALPTINTGAKKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSNPAIGYVSGLEKT
LRSVFPIRDFAGTAEMDFVHYELEDPKFDVEECRQRGITYAAPMRVTLRLIVFEVDADTE
TRSVLDIKEQDVYMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKY
LFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTAEEILGQFYNKVTF
VRGEGGWQIPYTAEAWRGLKPAFDIVDAKSGEVVFAAGHKISPRAANKAEKDGLATLLIP
TEEVYGRYSAYDLINEKTGEIYIEAGDEVSPENLEKLDKAGIDRLELLDIDHVTTGPWIR
NTLKADKAEERDQALSDIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKMNMR
LDLDAEDTVTTLRVEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGL
LRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKR
RVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIE
TPYRKVIDGKVTNDVVYLSAMEEAKHTIAQANAETNADGTLAEDLISAREAGEFLMAPRD
NITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGTV
ARDSGAAIAAKRAGIIDQVDATRIVIRATGDVEPGQSGVDIYTLQKFQRSNQDTCINQRP
LVKVGELVQAGDVIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFT
SIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITP
KGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAIE
REEIDRLAKDREDERGILNRATFNRLQEMLIGQTATAAPKGVKKGVVIDEALLGEVERHE
WWKFAVEDDVRQTGIEAVKAQYDEAVKLIVEKFEDRVDKLQRGDELPPGVLKMVKVFVAV
KRKLQPGDKMAGRHGNKGIISRILPAEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETH
LGWAARGLGAQIGQALDAWREANPNPEAGQPPEAVKELLKTIYGDNYVAEIEARSPEQIV
ELAQNVRAGVPMATPVFDGAVESDVSAMLKLAGLDESGQVSLFDGRTGDVFDRKVTVGYK
YVLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEM
LTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELAAMDEIDDDGM
AAAAE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaggctctcccaacgatcaacaccggcgcgaagaagcgcatccgcaaggtg
ttcggcgacatccacgaagtggtgcagatgccgaacctgatcgaagttcaaagggagagt
tacgaacagttcctccgttccaacccggcgatcggctatgtgtcgggcctggaaaagacc
ctgcgcagcgtcttcccgatccgcgacttcgccggcaccgccgaaatggacttcgtccat
tatgaactagaagacccgaagttcgacgtcgaggaatgccgccagcgtggcatcacctat
gccgcgccgatgcgcgtcaccctgcgcctgatcgtgttcgaggtcgatgccgacaccgaa
acccgttcggtcctcgatatcaaggagcaggacgtgtacatgggcgacatgccgctcatg
acgcagaacggcaccttcatcgtcaacggcaccgagcgcgtcatcgtgtcgcagatgcac
cgttcgccgggcgtcctgttcgaccatgaccgtggcaagacccattcgtcgggcaaatat
ctgttcgctgcccgcgtcattccctaccgtggctcgtggctcgacttcgagttcgacgcc
aaggacatcgtcaacgtgcgtatcgaccgcaagcgcaagctgccggtcaccgcgctgctg
tacgcgctcggcctcaccgccgaggaaatcctgggccagttctacaacaaggtgaccttc
gtccgtggcgaaggcggctggcagatcccctacaccgccgaagcctggcgcggcctgaag
cccgcgttcgacatcgtcgacgccaagtcgggcgaagtcgtgttcgccgccggccacaag
atcagcccgcgcgctgccaacaaggcggaaaaggatggcctggccaccctgctgatcccg
accgaggaagtctatggccgctacagcgcctatgacctgatcaacgagaagaccggcgaa
atctacatcgaggccggcgacgaagtcagccccgaaaacctcgaaaagctcgacaaggcg
ggcatcgaccgcctggaactgctggacatcgaccatgtcaccaccggtccctggatccgc
aatacgctcaaggccgacaaggccgaagagcgcgaccaggccctgagcgacatctatcgc
gtcatgcgccccggcgagccgccgacgaaggaaaccgccgaagcgctgttcgccggcctg
ttcttcgatccggaacgctatgacctgtctgcggtcggccgcgtgaagatgaacatgcgc
ctcgacctggatgccgaggacaccgtcaccaccctgcgcgtcgaggacatcctggcggtc
gtcaaggaactggtgaacctgaaggacggcaagggcgagatcgacgatatcgacaatctc
ggcaaccgtcgcgtccgctcggtcggcgaactgctggaaaaccagtatcgcgtcggcctg
ctgcgcatggaacgtgcggtcaaggagcgcatgagctcggtcgacgtgtcgaccgtgatg
ccgaacgacctgatcaacgcgaagcccgccgtggccgcggtgcgtgaattcttcggcagc
tcgcagctgtcgcagttcatggaccagaccaacccgctgtcggaagtcacccacaagcgc
cgcgtttcggcccttgggccgggtggtctgacgcgtgagcgcgccggcttcgaagtccgc
gacgttcacccgacccattatggccgtatctgcccgattgaaacgcccgaaggcccgaac
atcggtctgatcaactcgctggccaccttcagccgcgtcaacaaatatggcttcatcgaa
accccgtaccgcaaggtgatcgacggcaaggtgaccaacgacgtcgtctatctgtcggcg
atggaagaagccaagcacacgatcgcgcaggccaacgccgaaaccaatgccgacggcacg
ctggcggaagacctgatctccgcccgtgaagccggcgaattcctgatggcgccgcgcgac
aacatcaccctgatggacgtcagccccaagcagctggtgtcggtcgcggcctcgctcatt
ccgttcctggaaaatgacgacgccaaccgcgccctcatgggatcgaacatgcagcgtcag
gcggtgccgctggtccgtgccgaggcgccgttcgtcggtaccggcatggaaggcaccgtg
gcccgtgactcgggcgcggcgatcgctgccaagcgcgccggcatcatcgaccaggtcgac
gcgacccgtatcgtgatccgcgccaccggcgatgtcgaacccggccagtcgggcgtcgac
atctacacgctgcagaagttccagcgctccaaccaggacacctgcatcaaccagcgtccg
ctggtgaaggtgggcgaactggtgcaggccggcgacgtcatcgccgacggcccgtcgacc
gagttcggcgagctggcgctgggccgcaacgtgcttgtcgcgttcatgccctggaacggc
tacaactacgaagactccatcctgatctccgagcggatcgtgaaggatgacgtcttcacc
tcgatccatatcgaggagttcgaggtcatggcccgcgacaccaagctgggtccggaagac
atcacccgcgacattccgaatgtcggtgaagaagcgctgcgcaacctcgacgaggctggc
atcgtgtacatcggcgccgaagtggagccgggcgacattctggtcggcaagatcaccccc
aagggtgaatcgccgatgaccccggaagaaaagctgctccgcgcgatcttcggtgagaag
gcaagcgacgtgcgcgacacctcgctgcgtctgccgccgggcgttgccggcaccgtcgtc
gaagtccgcgtcttcaaccgtcacggcatcgacaaggacgaacgcgccatggcgatcgag
cgggaggaaatcgaccgtctcgccaaggaccgtgaagacgaacgcggcatcctcaaccgt
gcgaccttcaaccgtctgcaggaaatgctgatcggccagaccgccaccgccgcccccaag
ggcgtcaagaagggcgttgtgatcgacgaggctctgctgggcgaagtcgagcgtcacgaa
tggtggaagttcgcggtcgaggacgatgtccgtcagaccggcatcgaagccgtcaaggcg
cagtatgacgaagcggtgaagctgatcgtcgagaagttcgaggatcgcgtcgacaagctg
cagcgcggcgacgagctgccgccgggcgtgctgaagatggtcaaggtgttcgtcgcggtg
aagcgcaagctgcagccgggcgacaagatggccggtcgtcatggtaacaagggtatcatc
agccgcatcctgccggccgaagacatgcccttcctggaagacggcacccccgtcgacttc
gtgctgaacccgctgggcgtgccgtcgcgcatgaacgtcggtcagatcttcgaaacccat
ctgggctgggccgcacgcggcctgggcgcccagatcggccaggctctggacgcatggcgt
gaagccaatccgaaccccgaggcaggccagccccccgaggcggtgaaggaactgctcaag
acgatctatggcgacaattatgtcgccgaaatcgaggcgcgcagccccgagcagatcgtc
gagctggcgcagaatgtccgtgcaggcgtgccgatggcgacgccggtgttcgacggtgcc
gtcgaatccgacgtgtcggcaatgctgaagctggcgggcctggacgaatccggccaggtt
tcgctgttcgacggccgcaccggcgacgtgttcgaccgcaaggtgaccgttggctacaaa
tatgtcctgaagctgcaccaccttgtcgacgacaagatccacgcacgttccatcggcccc
tactcgctcgtcacccagcagccgctgggcggtaaggcgcagttcggtggccagcgcttc
ggtgaaatggaagtgtgggcgctccaggcctatggcgccgcctacacgctgcaggaaatg
ctgacggtgaagtcggacgacgtggtcggccgcaccaaggtctatgaggcgatcgtcaag
ggcgacgacacgttcgaggccggcattcccgaaagcttcaacgtgctggtcaaggaaatg
cgttcgctgggcctcaacgtcgaactcgccgcgatggacgagattgacgacgacggcatg
gcggctgcggcggaataa
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integrated database retrieval system
