Sphingobium yanoikuyae: A6768_17690
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Entry
A6768_17690 CDS
T05170
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sya
Sphingobium yanoikuyae
Pathway
sya03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A6768_17690 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sya03021
]
A6768_17690 (rpoC)
03400 DNA repair and recombination proteins [BR:
sya03400
]
A6768_17690 (rpoC)
Enzymes [BR:
sya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A6768_17690 (rpoC)
Transcription machinery [BR:
sya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A6768_17690 (rpoC)
DNA repair and recombination proteins [BR:
sya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A6768_17690 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Vsr
Motif
Other DBs
NCBI-ProteinID:
ATI81649
UniProt:
A0A085K685
LinkDB
All DBs
Position
3839580..3843836
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPIQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLSDMQEVHQALYA
KAVTLHSKIISRVPQTDENGQQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMSLGFRHAFQAGISFGKDDMVIPDSKVTMVDETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDPKTGRLAPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEDDCGTEKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGTVIIPIGTLLDEAMITQIEAIGTQAVKIRSPLICESRMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEALSDGTIELRDMPT
ITDKNGRRLSLARNGEVAIIDSEGRERETHRLPYGATILFADGDAVKKGDRFAEWDPFTM
PVITEKPGIVKYVDLIDNKTLTEQTDEATGIAQRVVIEHRGAARTKEDLRPRLTLMDDNS
GEAARYMLAVGATLSVDDGAEVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDYVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEIIESGDTT
LLVGEQVDREEMDEINSKLQPGFAPAAGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAAMRAALRASAQVDLIAP
KSAAEEHAAELAQGPEAAIGDDPLGAVQGDDFTTQDMD
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgacgaacttcgccaatccgatccagaagccggaaaccttcgaccagatc
cagattggccttgcctccccggagcgcatccgcagctggtccttcggcgaaatcaagaag
ccggaaaccatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcccgc
atctttggtccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggcgtggaagtgaccgtgtcgaaggtccgccgcgag
cgcatgggccatatcgaactggccgcgccggttgcccacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcgtcctctat
ttcgaaagctatatcgtcaccgagccgggcctgaccccgctggagaagtatcagctgctg
accgaggacgaactgctcgacgcgcaggacgaatatggcgaggacgccttctcggccggc
atcggcgccgaagccgtcaagcagatgctgatggatctcgacctggaaggcgagaagcag
gcgctgctggacgaactggccgtcaccaagtcggaactgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgagagcttcctggaatcgggcaaccgccccgaatggatgatcctg
gacgtcgtgccggtcatcccgccggaactgcgcccgctggtgccgctggacggtggccgc
ttcgcgacctcggatctcaacgatctgtatcgccgcgtcatcaaccgtaacaaccgcctg
aagcgcctgatggagctgcgtgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgtcgacgccctgttcgataacggccgtcgcggccgtgtcatcaccggcgcc
aacaagcgtccgctcaagtcgctgtccgacatgctcaagggtaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtgaccggtcct
gagctgaagctgcatcagtgcggcctgcccaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctgtccatgacgctcaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcac
ccggtcatgctgaaccgcgcgccgacgcttcaccgtctgggcatccaggcattcgagccc
gtgctgatcgaaggcaaggcgatccagctgcacccgctcgtctgctcggccttcaacgcc
gacttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgttccctcgcaggacatggtcctgggtatctattacctgtcgatggaacgcgaaggc
gagccgggcgaaggcatgctgctgtccgacatgcaggaggtccatcaggccctctatgcc
aaggcggtcaccctgcactcgaagatcatcagccgcgtgccgcagaccgacgaaaatggt
cagcagtatatgaagcgcttcgagaccacgccgggtcgcatgctgctcggcgaatgcctg
ccgaagtcgcacaaggtgcccttcgacgtcgtcaaccgccttctgaccaagaaggaaatt
ggtgacgtcatcgaccaggtctatcgtcacaccggccagaaggacacggtgctgttcgcc
gacgccatcatgtcgctgggcttccgccacgcgttccaggccggcatcagcttcggcaag
gacgacatggtcatccccgacagcaaggtgacgatggtcgacgagaccaaggcactggtg
gcggattatgagcagcagtatcaggacggtctgatcacgcagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtcgcgaacgccatgatggacgagatc
cgtgcccagcccaaggatcccaagaccggccgtctggcaccgatcaactcgatctacatg
atggcgcactcgggtgcccgtggttcgcaggcccagatgaagcagctggcaggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggtctgaccgttcttgaatacttcaactcgacccacggcgcccgtaagggtctggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtgtcg
caggactgcaccatcgtcgaggacgattgcggcaccgaaaaggcgctggagatgaaggcc
atcgttcagggtggttcggtcatcgcctcgctgggcgaacgcattctgggccgtaccacg
gcgcaggatatcgtcgacagcaaggatggcaccgtcatcatcccgatcggcaccctgctg
gacgaagccatgatcacccagatcgaggcgatcggcacgcaggccgtgaagatccgcagc
ccgctgatctgcgaaagccggatgggcgtttgcggcaagtgctacggccgtgacctcgcc
cgtggtacgccggtgaacatcggtgaagcggtcggcgtcatcgcggcgcagtccatcggt
gaaccgggtacgcagctgaccatgcgtaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaagccctgtcggacggcacgatcgaactgcgcgacatgccgacc
atcaccgacaagaatggtcgtcgcctgtcgctcgcccgtaacggcgaagtcgcgatcatc
gacagcgaaggtcgcgaacgcgaaacgcaccgcctgccttatggcgccaccatcctgttc
gcagatggcgatgccgtgaagaagggcgatcgcttcgccgagtgggatcccttcaccatg
ccggtgatcacggaaaagccgggtatcgttaagtatgtcgacctgatcgacaacaagacg
ctgaccgaacagaccgacgaagccaccggcatcgcccagcgcgtcgtcatcgaacatcgt
ggtgccgcccggacgaaggaagatctgcgtccgcgcctgaccctgatggacgacaatagc
ggtgaagccgcccgctacatgctggcggtcggtgcgaccctgtcggtcgacgatggtgcg
gaagttcaggccggtgacgtgctggcgcgtgtcagccgtgaagcggccaagacccgcgac
atcaccggtggtctgccgcgcgttgccgagctgttcgaagcccgcaagcccaaggacaat
gcgatcattgccaaggtctcgggccgcgtgcagttcctcaaggattacaaggcgaagcgc
aagatcgccatcaatcccgaggatggcggcgagccggtcgaatatctgatccccaagagc
aaggtgatcgacgttcaggaaggcgactacgtgaagcgtggcgacaacctgatcggtggt
tcgcccgatccgcacgacattctggaagtgctcggcatcgagccgctggccgaatatctg
gtcgccgaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gaaacgatcgttcgtcagatgctgcagaaggtcgagatcatcgagtccggcgacaccacc
ctgctggtgggcgagcaggtcgaccgcgaggaaatggacgagatcaacagcaagctgcag
ccgggcttcgcccctgctgccggcaagccggtgctgctcggcatcaccaaggcctcgctg
cagacccgttcgttcatctcggcagcgtccttccaggaaaccacccgcgtcctcacggaa
gcggcggtccagggcaagaaggacacgctggttggcctgaaggaaaacgtcatcgtcggc
cgccttatcccggcgggcaccggtgccggcatgaaccgcctgcgcgttgccgcctcgtcg
cgtgacgcggcgatgcgggccgcgctgcgcgcttcggcccaggtcgacctgatcgcgccg
aagagcgcggccgaggaacatgcggccgaactggcccagggtccggaagccgcaatcggc
gacgatccgctgggcgccgtgcagggtgatgatttcaccacgcaggacatggactga
DBGET
integrated database retrieval system
