Sphingobium yanoikuyae: A6768_18650
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Entry
A6768_18650 CDS
T05170
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sya
Sphingobium yanoikuyae
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sya03016
]
A6768_18650 (rnd)
Enzymes [BR:
sya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
A6768_18650 (rnd)
Transfer RNA biogenesis [BR:
sya03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A6768_18650 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ATI83404
UniProt:
A0A085K263
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All DBs
Position
4060948..4062114
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AA seq
388 aa
AA seq
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MQIHPLITDSKTLSDFCARMAKSPYVAVDTEFMRENSYWPELCLVQVADSSEAAAIDPKA
PGIDLTPLLDLLVNNEDVLKVFHAGGQDIEIVHNLTGKTPHPMFDTQIAAMALGLGEQIG
YGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIEIFPKMLEELRKTGRGD
WLDQEMERISDPSNYENDPSEAWKRVRIASRKADVLGRLKALAAWREKEAQDKNLPRGRI
VKDETLADIASHPPRAQEDLGKVRGLSATWKSNDIGGRLMAALGAHKPLGKDEMPERDPK
RPGLGKDGALVADLLKLLLKIRSRDINVAPRLLARTDDIEALAAGVRDDLAILEGWRYDQ
FGRDAVDLVEGRLAFAVKNGRLKMTRTE
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcaaattcatccgctgattaccgacagcaagacgctttccgatttctgcgcccgcatg
gccaaatccccctatgtcgcggtggataccgagttcatgcgcgagaatagctactggccc
gaactctgcctggtccaggtcgccgactccagcgaggctgccgcgatcgatcccaaggcg
ccgggcatcgaccttacgcccctgctcgacctgctggtcaataatgaggacgtgctcaag
gtcttccatgccggcggccaggacatcgagatcgtccataatctgaccggcaagacgcca
catccgatgttcgacacccagatcgccgccatggcgctcggccttggcgaacagatcggc
tatggcaacctcgtcgacgcctggctcggcgtgcagctcgacaagggcgcgcgtttcacc
gactgggcgcgtcgcccgctcgacaagcgccagatcgactatgcgatcggcgatgtcacc
tatctgatcgaaatcttccccaagatgctggaagaactgcgcaagaccggacgcggcgac
tggctcgaccaggaaatggagcggatcagcgatccgtccaattacgaaaatgatccgtcc
gaagcctggaagcgcgtccgcatcgccagccgcaaggccgatgtgctgggtcgcctcaag
gcgctggccgcctggcgcgagaaggaagcgcaggacaagaatctgccgcgcggccgcatc
gtcaaggacgagacgctggccgacatcgccagccacccgccgcgcgcgcaggaggatctg
ggcaaggtgcgcggcctgtccgccacctggaagagcaacgacattggcggccggctgatg
gcggctctcggcgcgcacaagccgctcggcaaggacgagatgcccgagcgcgatcccaag
cgtccgggcctgggcaaggatggcgcgcttgtcgccgacctgttgaagctgttgctcaag
attcgctcgcgcgacatcaatgtcgccccccgcctgctcgcccgcaccgacgatatcgag
gcgctggccgccggcgtgcgcgacgatctcgcgatcctggaaggctggcgctatgaccag
ttcggccgggacgcggtggacctggtcgaaggacgccttgcctttgcggtcaagaatggc
cggctcaagatgacgcggactgaataa
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