Sphingobium yanoikuyae: A6768_24535
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Entry
A6768_24535 CDS
T05170
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sya
Sphingobium yanoikuyae
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sya03016
]
A6768_24535
Enzymes [BR:
sya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
A6768_24535
Transfer RNA biogenesis [BR:
sya03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
A6768_24535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ATI83511
UniProt:
A0A291N898
LinkDB
All DBs
Position
5278639..5279190
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AA seq
183 aa
AA seq
DB search
MLARTPSLYRLIVALKPPTRITRQIDHFAETLAPDAQRILPAHQHITLGITDDWPDYPYA
LVKAMHRSFTGILADPFDLSLDQLSEGGRSAALRPAHALPPLRELQRKVALAMKRAGVGA
RPGWSFNPHQTLYYRDGPPATQRISGFHWRVEDFVLLCSHVGRTHHELLGRWPLRGSGQY
SLF
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcccgcacgccgtcgctctatcgcctgatcgtggcgctgaagccgccgacccgc
atcacgcggcagatcgaccatttcgccgagacgctggcgcccgatgcccagcgcatcctg
ccggcgcaccagcatatcacgctggggatcaccgacgactggccggactatccctatgcg
ctggtgaaggcgatgcaccgcagcttcaccggcatcctggccgatccgttcgatctgtcg
ctggatcagttgagcgaggggggccggtcggccgcgctgcgaccggcgcatgcactgccg
ccgctccgggaattgcagcgcaaggtggcgctggcgatgaagcgggcgggggtgggcgcg
cgtccgggctggagcttcaacccgcaccagacgctctattatcgcgacggtcccccggcg
acccagcggatcagcggctttcactggcgggtcgaggatttcgtgctgctatgcagccat
gtcggccgcacccatcatgagctgctggggcgatggccgctgcgcggcagcggccaatat
agcctgttctga
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