Sphingobium yanoikuyae: A6768_24580
Help
Entry
A6768_24580 CDS
T05170
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sya
Sphingobium yanoikuyae
Pathway
sya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A6768_24580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sya03019
]
A6768_24580
03009 Ribosome biogenesis [BR:
sya03009
]
A6768_24580
Enzymes [BR:
sya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A6768_24580
Messenger RNA biogenesis [BR:
sya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A6768_24580
Ribosome biogenesis [BR:
sya03009
]
Prokaryotic type
rRNA processing factors
A6768_24580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ATI83514
UniProt:
A0A291N7Z9
LinkDB
All DBs
Position
complement(5285143..5287857)
Genome browser
AA seq
904 aa
AA seq
DB search
MLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRADYDEDEDAAGDDGVEVVEA
THHDDEEGAHEAEASEGESNEGGRPNRRKREKGDDAADELRRKRMALRRRYKIQDVIKRR
QVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIIA
EMALPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLRAAAPELIHNDSDLIKR
AIRDIYNKDIEEVIVEGEHGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQLAA
MYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQLRLR
DMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRTGVL
EASTRQCPHCEGTGLVRTASSAGLGALRMLEEEAARGRGSVITLRASQEAAFYVLNNKRR
ELDEIEQRYGVRIVVLPDGEIEGARMSVEPSGPRPERVVTYAPLAEEEDDLDVIEEEEEE
EEIEEEAAPERQERGERGDRGEEREGGRRRRRRRRRRGGQRDDAQGETGEDNGAEDGEEG
EESADVETDAEAVAAEPAAEGEDEGGSRRRGRRGRRGGRRRREGGEAGAEAGETAGEDSA
ETVIEAEAAAPVEEAPVAEAAPEEAPAEEAPKTRRRPRARKAKDAAAEPAAVEATEAPAE
VVAEAPAAEPVAEEAAEKPKPKRTRKKKADVEAEAAAAAEAPVVEAVAEEVAEKPKPKRT
RKKKVEPVAEEAAVEAAPAVTEVAAASAEAAPASEAVTADPAAEAESDENGEPRRGWWQR
TFGQ
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgatgcgcgccaccgggaagaaacccgggtcgcggtcgtcaagggaaaccgg
atcgaggaatttgacttcgaatccgctgagcacaagcagctcaagggcaatatctacctc
gccaaggtcacccgcgtagagccttcgctccaggcggccttcgtcgattatggtggcaat
cgccacggcttccttgctttcagcgaaatccatcccgactattaccagatcccgcgcgaa
gaccgcgaggcgttgctgcgcgaggaacgcgcgcatgccgaggaagaggccgccctgcgc
gccgactatgacgaggatgaggacgccgccggggacgatggcgtcgaggtcgtggaagcg
acccatcatgacgatgaggaaggcgcccacgaagccgaagccagcgaaggcgaaagcaac
gaaggcggccgcccgaaccggcgcaagcgcgaaaagggcgacgacgcggccgatgagctg
cgccgcaagcgcatggcgctgcgccgtcgctacaagatccaggacgtcatcaagcgccgc
caggtgctgctggtgcaggtcgtcaaggaagagcgcggcaacaagggtgcggcgctgacc
acctatttgtcgctggccggtcgctattgcgtgctgatgcccaacaccagccatggtggc
ggcatttcgcgcaagatcagcaatgcggccgaccgcaagcggctgaagtcgatcatcgcc
gaaatggcgctgccttcgtcgatgggctgcatcgtgcgcaccgccggcctgcagcgcacc
aagcccgagatcaagcgcgacttcgactatctcgcccgactgtgggacgagattcgcgag
aagacgctgcgcgccgccgcgcccgagctgatccataacgacagcgacctcatcaagcgg
gcgatccgcgatatctacaacaaggatatcgaggaagtgatcgtcgagggcgaacatggc
tacaaggccgccaaggacttcatgaagctgctgatgccgagccatgcgcggcgggtgaag
caatatgccgatgcggtgtcgctgttccagcgcgccagcgtcgaggaccagctggcggcg
atgtacaaccccgtcgttcagctcaagtccggcggttatctggtcatcaacccgactgag
gcgctggtgtcgatcgacatcaactcgggccggtcgacccgcgagcatggcatcgagcag
accgcggtcgccaccaacctggaggcggcgcgcgagatcgcccgccagctgcgcctgcgc
gacatggcgggcctggtcgtcatcgacttcatcgacatggagatgaactccaacatccgt
aaggtcgagaaggcgatgaaggaggcgctgaaggacgatcgcgcccgcatccaggtcggc
cgcatttcgggcttcggcctgatggaaatgagccgtcagcgcctgcgcaccggcgtgctg
gaagcatcgacccgccagtgcccgcattgcgaaggcacgggcctggtccgcaccgcatcg
tcggcgggcctgggcgcgctgcgcatgctggaggaagaggccgctcgcggtcgtggcagt
gtcatcaccctgcgcgccagccaggaagccgccttctacgtcctcaacaacaagcgtcgc
gaattggacgagatcgaacagcgctatggcgtgcgcatcgtcgttctgcccgatggcgag
atcgagggcgcccgcatgtcggtcgagcccagcggtccgcgccccgaacgcgtcgtcacc
tacgccccgctcgcggaggaagaggatgacctcgacgtgatcgaggaagaggaagaagag
gaagagatcgaggaggaagccgcccccgaacgccaggagcgtggcgagcgcggtgaccgg
ggcgaggaacgcgaaggcggtcgccgccgtcgccgccgtcgccgtcgccgtggtggccag
cgcgatgatgcgcagggcgagaccggcgaagacaatggcgccgaagacggtgaggaaggc
gaggaatcggctgacgtcgagaccgatgccgaggctgttgccgccgaaccggccgccgaa
ggcgaggatgaaggtggcagccgccgtcgtggtcgccgcggtcgccgtggcggtcgccgc
cgtcgcgaaggtggcgaagcgggcgccgaagccggtgagaccgctggtgaggacagcgct
gagacggtgatcgaagccgaagcggccgcgcctgtcgaggaagctccggttgccgaagcg
gcgccggaagaagccccggccgaggaagcgcccaagacgcgccgtcgcccccgtgcccgc
aaagcaaaggacgcggccgccgagccggctgccgtcgaagcgaccgaagccccggccgag
gtcgttgccgaagcgcctgccgccgagccggttgccgaggaagcggccgaaaagcccaag
cccaagcgcacccgcaagaagaaggcggacgtcgaggccgaagccgctgcggcagccgaa
gcgcccgtcgtcgaagcggttgccgaggaagtggccgaaaagcccaagcccaagcgcacc
cgcaagaagaaggtcgaaccggtcgccgaggaagccgccgtcgaggccgcgccggccgtg
accgaagtcgctgcagcgtcggccgaggctgcgccggccagcgaagccgtcactgccgat
cccgccgccgaggcggagagcgacgagaatggcgagccgcgccgtggctggtggcagcgc
accttcggccagtaa
DBGET
integrated database retrieval system
