Streptomyces yangpuensis: NRK68_16170
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Entry
NRK68_16170 CDS
T08585
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
syan
Streptomyces yangpuensis
Brite
KEGG Orthology (KO) [BR:
syan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syan03019
]
NRK68_16170 (hrpA)
Enzymes [BR:
syan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NRK68_16170 (hrpA)
Messenger RNA biogenesis [BR:
syan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NRK68_16170 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
SLFN-g3_helicase
nSTAND3
NACHT
T2SSE
nSTAND_NTPase5
NTPase_1
AAA_25
ResIII
PhoH
AAA_30
TsaE
DUF6139
AAA_16
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
UUY48599
UniProt:
A0ABY5PWW2
LinkDB
All DBs
Position
3557096..3561034
Genome browser
AA seq
1312 aa
AA seq
DB search
MSTSFAALQTLLGEISLRDAHRLGRRLEGARRIRKPEAKQAVLDEIATEAAKAAERLAGR
ASRMPEVTYPENLPVSQKKDEIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRGVRGM
IGHTQPRRIAARTVAERIAEELRSEIGRTVGWKVRFTDQVDQDATFVKLMTDGILLAEIQ
TDRELRAYDTIIIDEAHERSLNIDFLLGYLATLLPKRPDLKVVITSATIDPERFSRHFGD
APIVEVSGRTYPVEVRYRPLLEEDSEDSDRDQITAICDAVDELQAEGPGDILVFLSGERE
IRDTADALIKKKLRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVPGIKY
VIDPGNARISRYSHRTKVQRLPIERISQASANQRKGRCGRTSDGICIRLYSEADFDARPE
FTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALETDEKSS
PEGRKGQRLTQMGRKLSQLPVDPRLARMVIEADKNNCVREVMVIAAALSIQDPRERPSDK
QTQADQHHARFKDETSDFLSFLNMWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDI
YSQLRTVAKSMGIHVNEADAPEQVVHVSLLAGLLSHIGLKDTDKNEYLGARSAKFAIFPG
SSLFKKQPKFVMSAELVETSRLWARVNAKVEPEWVEPLAQHLIKRTYSEPHWEKDQAAVM
AYEKVTLYGVPIVAQRKINYGRIDPEVSRELFIRNALVEGDWRTHHKFYADNRKLLTEVE
ELENRARRRDIVVDDETLFDFYDQRIPEHVVSGAHFDSWWKHKKRDEPELLDFEREMLLT
EKAAGVTKADYPDSWRQGQLKFRVTYQFEPGADADGVTVHIPLQVLNQVTEEGFDWQIPG
LREEVVTELIRSLPKPIRRHYVPAPNYAGRFLATAVPLQEPLPVTLARELQRMVGVPVSA
EDFDLTRIPDHLKITFRIVDERRRKIAEDKDLEALRLRLKPKARQALSKAAAATAERAGG
ESVERTGLTDWTIGTLTKVFETRRAGQPVKAYPALVDEGTSVSVRLFDTEAEQQRAMWLG
TRRLILLNIPVNPAKFASDHLTNQQKLALSRNPHGSIQALFDDCATAAADKLIADHGGPA
WDEAGFRKLYEAVRADLVDTTVRAVNQTQQVLAAWQACERRLKSTSSLALVANIQDVRTQ
LAALMPAGFVTLTGLRRLPDLMRYLVAADRRLQQMPTGVQRDTTRMEKVHEMQDEYAWLL
EQLPKGRPVPETVTDIRWMIEELRVSYFAHALGTAYPISDKRIVKAVDAAAP
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttccttcgccgccctgcagacgcttctcggtgagatctccctccgtgacgcg
caccgcctcggccgccgcctcgaaggcgcccgccgcatccgcaagcccgaggccaagcag
gccgtgctcgacgagatcgccacggaggccgcgaaggccgccgagcgactggccggccgt
gcctcgcggatgccggaggtcacgtatcccgagaacctgcccgtcagccagaagaaggac
gagatcgccgaggcgatacgcgaccaccaggtcgtgatcgtcgcgggcgagaccggctcc
ggcaagaccacgcagatccccaagatctgcatggagctgggccggggcgtccggggcatg
atcgggcacacccagccccgccggatcgccgcccgcacggtcgcggaacgcatcgccgag
gagctgaggtccgagatcggccggaccgtcggctggaaggtccggttcaccgaccaggtg
gaccaggacgcgaccttcgtgaagctgatgacggacggcatcctgctcgccgagatccag
acggaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcccacgagcgctcg
ctgaacatcgacttcctgctcggctacctggcgacgctgctgcccaagcggcccgacctg
aaggtcgtcatcacctcggcgacgatcgacccggagcgcttctcccgccacttcggtgac
gccccgatcgtcgaggtcagcgggcggacgtacccggtggaggtgcgctaccggccgctc
ctcgaagaggactccgaggactccgaccgcgaccagatcaccgcgatctgtgacgccgtg
gacgagctccaggccgagggcccgggcgacatcctggtcttcctctccggcgagcgcgag
atccgcgacaccgcggacgcgctgatcaagaagaagctccggttcaccgaggtcctgccg
ctctacgcccggctctcgcacgccgagcagcaccgggtcttccagccgcacaccgggcgc
cggatcgtgctcgcgaccaacgtcgccgagacctccctgacggtgccgggcatcaagtac
gtgatcgacccgggcaacgcccggatctcccgctacagccaccgcaccaaggtgcagcgc
ctgccgatcgagcggatctcccaggccagcgccaaccagcgcaagggccgctgcggccgt
accagcgacggcatctgcatccggctgtactccgaggccgacttcgacgcccggcccgag
ttcaccgacgccgagatcctgcgcacgaacctggcctccgtcatcctccagatgaccgcc
gccggcctcggcgagatcgagaagttccccttcatcgacccgccggaccaccgcaacatc
cgcgacggcgtccagctcctgcaggaactcggggcgctggagacggacgagaagtcctcc
ccggaggggaggaaggggcagcgcctgacgcagatgggccgcaagctgtcccagctgccc
gtcgacccgcggctggcccgcatggtcatcgaggccgacaagaacaactgcgtccgcgag
gtcatggtcatcgcggcggccctgtccatccaggacccgcgcgagcggccctcggacaag
cagacccaggccgaccagcaccatgcccgcttcaaggacgagaccagcgacttcctgtcg
ttcctgaacatgtggcgctacgtccgggagcagcagaaggagcgcggctcctcctccttc
cgccggatgtgcaagcaggagtacctgaacttcctgcggatccgcgagtggcaggacatc
tactcgcagctgcgcacggtcgccaagagcatgggcatccacgtcaacgaggcggacgcc
cccgagcaggtcgtgcatgtctcgctgctggccggactgctctcgcacatcggcctcaag
gacaccgacaagaacgagtacctgggcgcccggtcggccaagttcgcgatcttcccgggc
tcctcgctgttcaagaagcagccgaagttcgtgatgtcggccgagctggtggagacctcg
cggctgtgggcccgggtcaacgccaaggtcgagcccgagtgggtggagccgctggcgcag
cacctgatcaagcggacctacagcgagccgcactgggagaaggaccaggccgcggtgatg
gcgtacgagaaggtgacgctgtacggcgtgccgatcgtcgcccagcggaagatcaactac
ggccggatcgatcccgaggtatcgcgcgagctgttcatccgcaacgcgctggtcgagggc
gactggcgcacccaccacaagttctacgccgacaaccgcaagctcctcaccgaggtggag
gagctggagaaccgggcccggcgccgcgacatcgtggtcgacgacgagaccctcttcgac
ttctacgaccagcggatccccgagcacgtcgtctccggggcgcacttcgactcctggtgg
aagcacaagaagcgggacgagcccgaactgctcgacttcgagcgggagatgctgctcacg
gagaaggcggccggggtcaccaaggccgactatccggactcctggcggcaggggcagctg
aagttccgggtgacctaccagttcgagccgggcgcggacgcggacggcgtgaccgtccac
atcccgctccaggtgctcaaccaggtcaccgaggagggcttcgactggcagatcccgggc
ctgcgcgaggaggtcgtcaccgagctgatccgctcgctgcccaagccgatccgccgccac
tacgtgcccgcgccgaactacgcgggccggttcctggccacggccgtgccgttgcaggag
ccgctgccggtgacgctggcgcgcgagctccagcgcatggtcggggtgccggtgtcggcc
gaggacttcgacctcacccgcatcccggaccacttgaagatcactttccggatcgtcgac
gagcggcgccgcaagatcgccgaggacaaggacctggaggccctgcggctcaggctgaag
cccaaggcccgccaggccctctccaaggccgccgcggccaccgccgaacgggcgggcggg
gagtcggtggagcggaccgggctgaccgactggacgatcggcacgctgaccaaggtgttc
gagacccgccgcgccggccagccggtgaaggcgtacccggcgctggtggacgagggcacg
agtgtctccgtacggctcttcgacaccgaggcggagcagcagcgggcgatgtggctgggc
acccgccggctcatcctgctgaacatcccggtgaacccggcgaagttcgcctcggaccac
ctcaccaaccagcagaagctcgcgctctccaggaacccgcacggctccatccaggcgctg
ttcgacgactgcgcgaccgcggcggccgacaagctcatcgccgaccacggcggccccgcg
tgggacgaggcgggcttccggaagctctacgaggccgtccgcgccgacctggtggacacc
accgtgcgggccgtgaaccagacccagcaggtgctggccgcctggcaggcctgtgagcgg
cgtctgaagagcacctccagcctcgccctggtcgcgaacatccaggacgtcaggacgcag
ctggcggccctgatgccggccggtttcgtgacgctcaccgggctgcgcaggctgccggac
ctgatgcgctacctggtggcggcggaccggcggctccagcagatgcccacgggcgtccag
cgcgacaccacgcgcatggagaaggtccacgagatgcaggacgagtacgcctggctgctg
gagcagttgccgaagggacggccggtcccggagaccgtgaccgacatccgctggatgatc
gaggagctgcgcgtcagctacttcgcgcacgccctcggcacggcctacccgatctccgac
aagcggatcgtgaaggcggtggacgcggcggccccctga
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