Streptomyces yangpuensis: NRK68_19270
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Entry
NRK68_19270 CDS
T08585
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
syan
Streptomyces yangpuensis
Brite
KEGG Orthology (KO) [BR:
syan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syan03016
]
NRK68_19270
Enzymes [BR:
syan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NRK68_19270
Transfer RNA biogenesis [BR:
syan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NRK68_19270
Prokaryotic type
tRNA splicing ligases
NRK68_19270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
UUY49158
UniProt:
A0ABY5Q0E8
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All DBs
Position
4211297..4212490
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AA seq
397 aa
AA seq
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MSFVEVPGAQVPIRMWTDPASVEAGAMQQLHNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMKDAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSKLRSKIEQAIPVGMGLHREAVDPS
RLYGFSVEGYEDLWKRFDYLTDAVKFRQERATKQIGTLGSGNHFIEFCLDESGSVWLMLH
SGSRNIGNELAAHHIGVARGLAHNQNLVDRDLAVFLAATPEMEAYRNDLFWAQEYAKFNR
AAMMSLFKEVVRKEFRKARVSFDREISCHHNYVAEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNEKSFNSASHGAGRKMSRTAAKKKFSARDLAEQTRGVECRKDAG
VVDEIPGAYKSIEQVIDQQTDLVQVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgtagaggtaccgggggcccaggtcccgatcaggatgtggaccgaccccgcg
tcggtcgaggccggcgcgatgcagcagctccacaacgtcgccacccttccgtggatcaag
ggtctggccgtcatgccggacgtccactacggcaagggggccacggtcggctcggtgatc
gccatgaaggacgcggtctgcccggcggcggtgggtgtggacatcggctgcggcatgtcc
gcggtgaagacctccctgacggcgaacgacctcccgggcgacctctccaagctccgctcg
aagatcgagcaggcgatcccggtgggtatgggcctccacagggaggcggtggacccgtcg
cggctgtacggcttctcggtggaggggtacgaggacctgtggaagcggttcgactacctc
accgacgcggtcaaattccgtcaggaacgtgccacgaagcagatcggaacgctcggatcc
ggaaaccacttcatcgagttctgtctcgatgagtcaggttcggtctggctgatgctgcac
tcgggctcccggaacatcggcaacgaactcgccgcgcaccacatcggcgtggcccggggc
ctcgcgcacaaccagaacctggtcgaccgggacctggcggtcttcctcgcggcgacgccc
gagatggaggcgtaccgcaacgacctcttctgggcgcaggagtacgcgaagttcaaccgt
gcggcgatgatgagcctcttcaaggaggtcgtccgcaaggagttccgcaaggccagggtc
tccttcgaccgcgaaatcagctgccaccacaactacgtggcggaggagcggtacgacggc
atggacctcctggtcacccgtaagggcgcgatccgcgccggcagcggtgactacgggatc
atccccggctcgatgggcacgggctcgtacatcgtgaaggggctcggcaacgagaagtcc
ttcaactcggcctcgcacggtgcgggccggaagatgagccggacggcggcgaagaagaag
ttctcggcgcgcgatctggcggagcagacgaggggtgtcgagtgccgtaaggacgcgggc
gtcgtggacgagatcccgggtgcctacaagtcgatcgagcaggtcatcgaccagcagacc
gacctcgtccaggtcgtggccaagctcaagcaggtcatctgcgtcaagggctga
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