Streptomyces yangpuensis: NRK68_23275
Help
Entry
NRK68_23275 CDS
T08585
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
syan
Streptomyces yangpuensis
Pathway
syan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
syan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NRK68_23275 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syan03400
]
NRK68_23275 (ligD)
Enzymes [BR:
syan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NRK68_23275 (ligD)
DNA repair and recombination proteins [BR:
syan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NRK68_23275 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
UUY49891
LinkDB
All DBs
Position
5041736..5042650
Genome browser
AA seq
304 aa
AA seq
DB search
MTPITLVEGRRIALSNLDKVLYPETGFTKGEVLHYYATVAEPLLAQIHDRAVSFLRYPDG
PEGQLFFTKNPPPGAPDWVRTTPVPRSEDPSAAQVVVADLATLMWSANLVVEFHIHQWPA
GRPAVADRMVLDLDPGAPASVVECSAVALWLRERLAADGLDAYAKTSGSKGLHLAVPLEP
TPSAQVSAYAKQLAQEAERELPDFVVHRMAKALRPGKVFVDHSQNAAAKTTAAAYTLRAR
ARPTVSAPVTWAEVEACRTPDDLVFLADDIGPRLVRDGDLFAPLADPAQGRPLPRARPLP
RARP
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacattggtggagggccgtcgcatcgcgctcagcaacctcgacaaggtc
ctctaccccgagaccggcttcacgaagggcgaggtcctccactactacgccaccgtcgcg
gagcccctgctcgcccagatccacgaccgggcggtgtccttcctgcgctatccggacggg
ccggagggccagctgttcttcaccaagaatccgccgcccggcgcacccgactgggtgagg
accacccccgtgccccgctccgaggacccctccgccgcacaggtggtcgtcgccgacctg
gccaccctcatgtggtccgccaacctcgtcgtcgagttccacatccaccagtggcccgcc
ggccgacccgccgtcgccgaccgcatggtcctcgacctcgaccccggcgcgcccgcctcc
gtcgtcgagtgcagcgccgtcgccctctggctgcgcgagcgcctcgccgccgacggcctc
gacgcctacgcaaagacctccggctccaagggcctgcacctggccgtgcccctggagccg
accccctcggcgcaggtgtccgcgtacgcgaagcagctcgcccaggaggccgaacgcgag
ctccccgacttcgtcgtccaccgcatggccaaggccctgcgccccggcaaggtgttcgtc
gaccacagccagaacgccgccgccaagaccaccgccgccgcctacaccctgcgggcgcgg
gcccgccccaccgtgtccgcacccgtcacctgggcggaggtcgaggcctgccgcacccct
gacgacctggtcttcctcgccgacgacatcggcccgcggctcgtccgcgacggcgacctc
ttcgcccccctggccgatcccgcgcagggccgcccgctccccagggcccggccgctcccc
agggcccggccatga
DBGET
integrated database retrieval system
