Sphingobium sp. YBL2: TZ53_00815
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Entry
TZ53_00815 CDS
T03855
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
syb
Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syb03019
]
TZ53_00815
Enzymes [BR:
syb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TZ53_00815
Messenger RNA biogenesis [BR:
syb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TZ53_00815
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Cas3-like_C_2
AAA_19
AAA_30
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJR22542
UniProt:
A0A0C5XIX9
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All DBs
Position
166465..168936
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AA seq
823 aa
AA seq
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MTALPIDAVLPDLLAALREGSNAVLVAPPGAGKTTAVAPALLNEPWCTGQVLLLSPRRLA
ARAAAERIAELMGEQPGGTVGYATRMDSRMSARTRLLVLTEGIFVRRVQDDPELSGVSAV
LFDEVHERSLDSDFGLALALDAQGALRPDLRIVPMSATLDGARFAALLAHGGKDAPVVES
EGRIQPLELRHVGRAAEKRIEDAMAATIRRALNEETEGDLLAFLPGVAEIERTAERLEDA
GAEVHKLHGSLDPAAQRAAIRPSREGRRKVILATSIAETSLTIDGVRIVVDSGLARRPRY
DRAAGVTRLVTERASQAAATQRAGRAARQRPGVAYRLWEAAATAGMPPFDPPEILESDLS
SLMLDCALWGVSDPGELRWLDPPPAAAVAEARKRLTVLEALDEDGRITAHGKTLATLPLE
PRIGHMLVRAGEMGLAEIAAEVAVLLGERGIGGQDTDLSQRRMRWRRESGKRADVARAMA
KRWAKLAPTDSSGAIPVSAAGGHETGLCLALAFPDRVARRRSADGADWASVGGRGFRLDP
LSPLAREEWLAVGEVQGSAAGARILSAAPIGEAEVIDLFSARVAEHRTVRFRAANGGIEA
LRERRLGAVRLSSGSDDRPDPTAVVAALTDGVRQGGLDLLPWSDAARSLRMRAAFAGVEA
LSDTALMETLDEWLPPLLQGRRRLSDIDRSQLSGVLEGLIGWDGKQQVDRLAPPEFRSPA
GSGHEIDYAAEGGPRVELRVQALFGLNEHPVVGSGRIPLVLSLTSPAGRPIQTTRDLPGF
WKGSWSAVAKEMRGRYPKHPWPDDPAAAGATLRTKRADAKGKP
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgactgccctgcccatcgatgccgtgctgcccgacctgcttgccgccctgcgcgaaggc
agcaacgccgtgctggtggcgccgccgggcgcgggcaagacgacggcagtggccccggcg
ctgctgaacgaaccctggtgcaccgggcaggtgctgctgctctcccctcgccggcttgcg
gcccgcgcggcggcggaacggattgccgaactgatgggcgaacagcccggcggcacggtg
ggctatgcgacgcggatggattcgcggatgtcggcccggacccgcctgctggtcctgacc
gaaggcattttcgtgcggcgggtccaggacgatccggagctttcgggcgtttccgcggtc
ctcttcgacgaagtgcatgagcgcagcctggacagcgatttcggactggcgctcgcgctg
gacgcccagggcgcgctgcggccggacctgcggatcgtgccgatgtccgccaccctggac
ggggcacgttttgccgcgctgctcgcccatggcgggaaggacgcgccggtggtggagagc
gaaggccgcatccagccgctggaactgcgccatgtcggacgcgctgccgaaaagcggata
gaggatgcaatggcggccaccatccgccgggcgctcaacgaagagacggaaggcgacctg
ctcgccttcctgcccggcgtggcggaaatcgaacggacggcggaacggctggaggatgcc
ggggcggaggttcacaaactccacgggtcgctcgatccggcggcgcagcgcgcggcgatc
cgcccctcgcgggagggacggcggaaagtcatcctcgccacctccattgcggagaccagc
ctgaccatcgacggcgtgcggatcgtggtcgacagcgggctggcccggcggccacgctac
gaccgggcggcgggggtgacgcggctggtgacggagcgggcgagccaggcggcggcgacc
cagcgggcggggcgggcggcgcggcagcggccgggtgtcgcctatcggctatgggaagcg
gctgcgacggccgggatgccgcccttcgacccgccggaaatattggagagcgacctgtcg
agcctgatgctggactgcgcgctttggggggtgagcgatccgggcgagctgcgttggctg
gacccgccgcccgctgccgccgtggcggaggcgcgcaagcggctgacggtgctggaagcg
ctggacgaggatggacgcatcaccgcccatggcaagacgctcgccaccttgccgctggaa
ccgcgcatcggccatatgctggtgcgggcaggcgaaatgggtttggcggagatcgcggcg
gaggttgccgtgctgctgggcgagcggggaatcggcggacaggacacggacctgtcgcag
cggcggatgcgctggcggcgggaaagcggcaagcgcgccgatgtggcgcgggcgatggcg
aagcgatgggcgaagctggccccgacggattcatccggcgcaatccctgtcagtgcggcg
ggaggccatgaaaccggcctctgccttgccctcgctttcccggaccgggtcgcaaggcgc
cgctctgcggacggagccgattgggcaagcgtcgggggacgcggcttccggctcgacccg
ctcagccccctggcgcgggaggaatggctggcggtgggcgaagtgcagggcagcgccgcg
ggcgcccgcatcctttccgccgcaccgatcggcgaggcggaggtgatcgacctgttcagc
gctcgcgtcgcggaacaccgcaccgtgcgcttccgggccgccaatggcgggatagaggcg
ctgcgcgaaaggcggctgggcgcggtgcggctctcttccggttccgacgatcggcccgat
ccgaccgccgtggtcgccgccctgaccgacggcgtgcggcagggcgggctggacctgctt
ccctggtccgacgccgcgcggtcgctcaggatgcgcgctgccttcgccggggtggaggcg
ctgtcagataccgcgctgatggaaacgctggacgaatggctgcccccgctgctgcagggc
aggcgccgcctttccgacatcgaccgctcgcagctttcgggcgtgctggaagggctgatc
ggctgggacgggaagcagcaggtcgaccggctggccccgcccgaattccgttcccccgcc
ggcagcggccatgagatcgactatgcggcggagggcggcccccgcgtcgaactgcgcgtc
caggccctgttcggcctcaacgagcatccggtggtcggcagcgggcgcattccgctggtc
ctctccctcacctcgcccgccggccggccgatccagacgacgcgcgacctgccgggcttc
tggaagggcagttggagcgccgtggcgaaggagatgcgcggccgctatcccaaacatccc
tggccggacgacccggcggccgccggcgccacgctgcgcacgaaacgcgccgacgccaag
gggaagccttga
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