Sphingobium sp. YBL2: TZ53_02775
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Entry
TZ53_02775 CDS
T03855
Name
(GenBank) recombinase RecF
KO
K03629
DNA replication and repair protein RecF
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TZ53_02775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_02775
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TZ53_02775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_21
AAA_23
AAA_15
AAA_22
AAA_30
SbcC_Walker_B
ABC_tran
AAA_29
AAA_16
AAA_25
AAA_27
AAA_18
nSTAND3
Aq_aa27
Motif
Other DBs
NCBI-ProteinID:
AJR22854
LinkDB
All DBs
Position
complement(569988..571058)
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AA seq
356 aa
AA seq
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MIGRLTLSDFRNHADALIMPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMV
RQDGAGGFGIAAEVDGVMLGTGVLASAPDRRQVRIGGVASSANALADHLSIVWLTPAMDR
LFMDSPGGRRRFLDRLTLALHPAHAAHSARYEAAMRARNRLLNDLSAADPSWLSALETQM
DEHGAALAVARADLVGRLQAALEDQPDHPFARPLLAIEGEGEGDEPLGLRLARERRRDAA
AGRTLSGPHRQDLAVVHAAKAQAAALCSTGEQKALLLSILLAHAALVAAHRGQPPVLLLD
EVAAHLDPSRRAALFDRLRETGGQVWMTGTESALFNGLPVASRFCVTAGHVFRSAD
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgatcggccgtcttaccttgagcgatttccgcaatcatgcggatgcactgatcatgccc
gatcacagtttcatcgtgctgaccggggataatggcgcgggcaagaccaacatattggaa
gccgtgtcgatgttggcgccgggacgcggcctgcgcggcgcggccctgcgcgacatggtc
cggcaggacggggcgggcggtttcggcatagcggcggaagtggacggcgtgatgctgggt
acaggggttctcgcttcggcccccgaccggcgtcaggtgcggatcgggggcgtcgcctcc
tccgccaatgcgctggcggatcatctgtccatcgtgtggttgacgccggccatggaccgg
ctgttcatggacagtcccggcgggcggcgtcgtttcctggaccggctgacgctggcgctt
caccccgcccatgccgcgcacagcgcccgctacgaggcggcgatgcgggcgcgcaaccgg
ctgcttaacgatctgtccgccgccgatccttcctggctgagcgcgcttgaaacgcagatg
gacgagcatggcgcggcgcttgccgtcgcgcgcgccgatctggtcggccgcttgcaggcc
gcgctggaggaccagcccgaccatcccttcgcccgtccgctgctggcgatcgagggggag
ggggagggcgacgagcccctggggcttcgcctggcccgcgaacgccgccgcgatgccgct
gccggtcgcaccttgtccggcccgcaccggcaggaccttgccgtcgttcacgccgccaag
gcgcaggctgctgcgctctgttcgaccggcgagcagaaggcgctgctgctctccatcctc
ctcgcccatgcggctctggtggcggctcatcgcggccagccgccggtgctgctgctcgac
gaagtggcggcgcatctcgacccgtcgcggcgggccgcgctgttcgaccggctgcgggaa
accggcggccaggtctggatgacggggacggaatccgcacttttcaacggcttgcctgtg
gccagccggttttgcgtaacggcggggcacgtctttcgttccgcagattga
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