Sphingobium sp. YBL2: TZ53_04225
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Entry
TZ53_04225 CDS
T03855
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
syb
Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syb03016
]
TZ53_04225
Enzymes [BR:
syb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TZ53_04225
Transfer RNA biogenesis [BR:
syb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TZ53_04225
Prokaryotic type
tRNA splicing ligases
TZ53_04225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AJR23091
LinkDB
All DBs
Position
complement(881036..882265)
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AA seq
409 aa
AA seq
DB search
MTESRTYDIQHVEGGKPIKLWTRGVPVDDKAHEQLRKAAQMPFVFKHVAAMPDVHVGIGA
TVGSVIPTKGAVIPAAVGVDIGCGMMAARTSLMASDLPDNLEGIRSAIEQAVPHGRSVGR
GQRDHGSWGAPPAEIVAAWATLVERFDRITDKYPRFKNTNQLTHLGTLGTGNHFIELCLD
TEQRVWIMLHSGSRGVGNAIGTFFIELAKQDMRKWFINLPDEDLAYFPEGTDHFDDYVEA
VEWAQDFAALNRRMMMTNVIRALRGQITKPFDAELEAVNCHHNYVRRENHFGQNVLVTRK
GAVRAAKGTMGIIPGSMGAKSFIVRGLGNVESFESCSHGAGRVMSRTQAKKLVSLDEHIA
DTAGVECRKDESVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagagcaggacttacgatattcagcacgtcgagggcggcaagccgatcaagctg
tggacacgcggcgtgccggtcgacgataaggcgcatgagcagctccgcaaggcggcgcag
atgcccttcgtgttcaagcatgtggcggccatgccggacgtgcatgtcggcatcggcgcg
accgttggctcggtgatcccgaccaagggagcggtgatcccggcagctgtgggtgtcgat
atcggctgcggcatgatggcggcgcgcacctcgctgatggcgagcgaccttccggacaat
ctggaaggcatccgctcggcgatcgagcaggcggtgccgcatggccggtcggtcggccgc
ggccagcgcgatcatggctcgtggggtgccccgccggccgagatcgtcgcggcctgggcg
acactcgtggagcgctttgaccggatcacggacaaatatccgcggttcaagaacacgaac
cagctcacccatctggggacgctggggacgggcaaccacttcatcgagctgtgcctcgat
accgagcagcgcgtgtggatcatgctccactcgggttcgcgcggcgtagggaatgcgatt
ggcaccttcttcatcgaactggccaagcaggacatgcgcaagtggttcatcaacctgccc
gatgaggatttggcctacttcccggaagggaccgatcatttcgacgactatgtggaggcg
gtcgagtgggcgcaggacttcgcggcgctgaaccgccggatgatgatgaccaatgtgatc
cgggcgctgcgtggccagatcaccaagccattcgatgccgaactggaggcggtgaactgc
catcacaactatgttcgccgtgagaaccatttcggccagaatgtgctcgtgacccgcaag
ggcgcggtgcgcgcggcgaagggcacgatgggcatcatcccgggttcgatgggtgcgaag
tctttcatcgtgcgcggtctgggcaatgtggaatcgttcgagagctgcagccatggcgca
gggcgcgtgatgtcccgcacccaggccaagaagctggtctcgctcgacgagcatatcgcc
gacaccgcgggcgtcgagtgccgcaaggacgagagcgtcatcgacgaaacgcccaaggcc
tacaagccgatcgaagcagtgatggcggcgcaggccgatctggtggagatcgtccatacg
ttgaaacaggtcgtgtgcgtgaaggggtaa
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