Sphingobium sp. YBL2: TZ53_04695
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Entry
TZ53_04695 CDS
T03855
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TZ53_04695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syb03021
]
TZ53_04695
03019 Messenger RNA biogenesis [BR:
syb03019
]
TZ53_04695
Transcription machinery [BR:
syb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TZ53_04695
Messenger RNA biogenesis [BR:
syb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TZ53_04695
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_22
Spore_III_AA
NACHT
AAA
AAA_25
AAA_14
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
AJR23168
LinkDB
All DBs
Position
979130..980386
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKKAPAELVTMAEELGVEGASTLRKQDLMFAILKVEADNGEQIMGEGTIEVLPD
GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLISVN
FDDPEVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIVSPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKAKLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaaggatctcaagaaaaaagcgcccgccgaactcgtgaccatggcggaggaa
ctgggcgtcgaaggcgcatcgaccctgcgcaagcaggacctgatgttcgcgatcctcaag
gtcgaggccgacaatggcgagcagatcatgggcgagggcacgatagaggtgctgcccgac
ggcttcggcttcctgcgctcgcccgaagcgaacttcctcgccggtcccgacgacatctat
gtctcgcccaaccaggtccgcaaattcggcctgcgcaccggcgacacggtggaaggcgaa
atccgcgcgcccaaggatggcgagcgttatttcgcgctgaccaagctcatctcggtcaat
ttcgacgatcccgaagtcgtccgccatcgcgtcaatttcgacaatctgacgccgctctac
ccgacgcagaagctgacgctcgacgcgaccgacccgaccgtcaaggacaagtcggcccgc
gtcatcgacatcgtctcgccgcagggcaagggccagcgcgccctgatcgtcgcgccgccc
cgcaccggcaagacggtgctgctccagaatatcgccaaggcgatcaccgacaatcacccc
gaagtcttcctgatcgtcctgctgatcgacgagcgtccggaagaagtcaccgacatgcag
cgcagcgtgaagggggaggtggtttcctcgaccttcgacgaaccggcgcaacgccacgtc
caggtcgctgaaatggtgatcgaaaaggccaagcgcctcgtggaacacaagaaggacgtg
gtgatcctgctcgactcgatcacccgcctcggccgcgcctacaacacggtggtgccgtcc
tcgggcaaggtgctgaccggcggcgtcgacgccaatgcattgcagcggccgaagcgcttc
ttcggcgcggcgcgcaatatcgaggaaggcggttcgctctcgatcatcgccaccgcgctg
atcgacaccggcagccgcatggacgaagtcatcttcgaagagttcaagggcaccggcaac
tcggaaatcgtgctggaccgcaaggtggcggacaagcgcatcttcccggcgctggacgtc
ggcaagtccggcacccgcaaggaagaactgctggtcgacaaggccaagctttccaagatg
tgggtgctgcgccgtatcctgatgcagatgggcacggtcgacgcgatggaattcctgctc
gacaagatgaaggattccaagaccaacgaggatttcttcgattcgatgaaccagtaa
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