Sphingobium sp. YBL2: TZ53_10555
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Entry
TZ53_10555 CDS
T03855
Name
(GenBank) 3-phosphoglycerate dehydrogenase
KO
K00058
D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:
1.1.1.95
1.1.1.399
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb00260
Glycine, serine and threonine metabolism
syb00270
Cysteine and methionine metabolism
syb00680
Methane metabolism
syb01100
Metabolic pathways
syb01110
Biosynthesis of secondary metabolites
syb01120
Microbial metabolism in diverse environments
syb01200
Carbon metabolism
syb01230
Biosynthesis of amino acids
Module
syb_M00020
Serine biosynthesis, glycerate-3P => serine
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09100 Metabolism
09102 Energy metabolism
00680 Methane metabolism
TZ53_10555
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
TZ53_10555
00270 Cysteine and methionine metabolism
TZ53_10555
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
syb04147
]
TZ53_10555
Enzymes [BR:
syb01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.95 phosphoglycerate dehydrogenase
TZ53_10555
1.1.1.399 2-oxoglutarate reductase
TZ53_10555
Exosome [BR:
syb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
TZ53_10555
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2-Hacid_dh_C
PGDH_inter
2-Hacid_dh
ACT
NAD_binding_2
UPF0020
ACT_AHAS_ss
F420_oxidored
Motif
Other DBs
NCBI-ProteinID:
AJR24102
UniProt:
A0A0C5XNC1
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All DBs
Position
2323500..2325080
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AA seq
526 aa
AA seq
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MPKVLISDKMDPRAAAIFRERGVEVDEITGKTPDELKAIIGQYDGLAIRSSTKVTKDILD
HATNLKVIGRAGIGVDNVDIPAASSKGVIVMNTPFGNSITTAEHAIALMFALARQLPEAN
AQTQQGLWPKNGFMGVEVTGKTLGLIGAGNIGSIVASRALGLKMKVVAFDPFLTPERAVE
MGVEKADLDTLLAKADFITLHTPLTDQTRNILSKENLAKTKKGVRIINCARGGLIDEAAL
KEALDSGHVAGAALDVFVTEPAKESPLFGTPNFICTPHLGASTDEAQVNVALQVAEQLSD
YLLDGGITNALNVPSLSAEEAPKLKPYMALAEELGSLVGQLEGDRIQSVSVEVEGHAAEL
NQKPITAAVLAGLMRVYSDTVNMVNAPFLAKERGLDVREVRHDREGDYQTLVRVTVKTEG
GDKSVAGTLFGNAQARLVELFGIKVEADLAGHMLYIVNQDAPGFIGRLGSTLGEANVNIG
TFHLGRRNQGGEAVLLLSVDGVVNETVLNDICKLAGVKTVKLLRFA
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggtactcatcagcgacaagatggacccccgcgccgccgcgatcttccgggag
cgcggcgtggaagtcgacgaaatcaccggtaagaccccggacgagctgaaggcgatcata
ggccaatatgacggcctcgccatccgcagctcgaccaaggtgacgaaggacattctcgac
cacgccaccaatctgaaggtcatcggccgcgccggcatcggcgtcgacaatgtcgacatc
ccggccgcctcgtccaagggcgtgatcgtcatgaacacgccgttcggcaattccattacc
accgccgaacacgccatcgcgctgatgttcgcactggcccgccagttgcccgaagccaat
gcccagacgcagcagggcctgtggccgaagaacggcttcatgggcgtggaagtcaccggc
aagacgctgggcctgatcggcgcgggcaatatcggctccatcgtcgccagccgcgccctg
ggcctcaagatgaaggtcgtcgccttcgaccccttcctgaccccggaacgcgccgtcgag
atgggcgtggagaaggccgatctggacacgctgctggcgaaggcggacttcattaccctg
cacacgccgctgaccgaccagacccgcaacatcctgagcaaggaaaatctggccaagacg
aagaagggcgtgcgcatcatcaactgcgcgcgcggcggcctgatcgacgaagccgcgctc
aaggaagcgctggattcgggccatgtcgctggcgccgcgctcgacgtgttcgtgaccgag
ccggcgaaggaatcgccgctgttcggcacgccgaacttcatctgcaccccgcatctgggc
gcgtcgaccgacgaagcgcaggtcaatgtcgcgctccaggtggcggaacagctcagcgac
tatctgctcgacggcggcatcaccaatgcgctgaacgtgcccagcctgtcggcggaggaa
gcgccgaagctcaagccctatatggcgctggctgaagaactgggcagccttgtgggccag
cttgagggcgaccgcatccagagcgtctcggtcgaggtcgagggccatgccgccgaactc
aaccagaagccgatcacggccgcggtgctggccgggctgatgcgcgtctattcggacacg
gtgaacatggtcaacgcgcccttcctggcgaaggaacgcggcctcgacgtgcgcgaagtg
cgccatgaccgtgagggcgactatcagacgctggtgcgcgtgaccgtgaagaccgaaggc
ggcgacaaatccgtcgccggcacgctgttcggcaatgcgcaggcgcgcctggtcgaactg
ttcgggatcaaggtcgaggcggatcttgcggggcacatgctctacatcgtcaaccaggac
gcgccgggcttcatcggccgcctgggctccactctgggcgaggcgaacgtcaacatcggc
accttccaccttggccgccgcaaccagggcggtgaagccgtgctgctgctgtcggtcgac
ggcgtggtcaatgaaaccgtcctcaacgacatctgcaagctggcaggcgtcaagacggtg
aagctcctccgcttcgcctga
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