Sphingobium sp. YBL2: TZ53_11625
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Entry
TZ53_11625 CDS
T03855
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TZ53_11625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_11625
Enzymes [BR:
syb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
TZ53_11625
DNA repair and recombination proteins [BR:
syb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TZ53_11625
Prokaryotic type
TZ53_11625
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AJR24279
LinkDB
All DBs
Position
complement(2538593..2539288)
Genome browser
AA seq
231 aa
AA seq
DB search
MSDTIKLDESWRAPLLREFESPYMQGLKRFLQEEKAQGKRIFPKGSEYFRALDLTPLDRV
KVVVLGQDPYHGEGQAHGLCFSVKPGVRTPPSLVNIYKELQSDLGLPPPRHGFLEHWARQ
GVLLLNSVLTVEMGKAASHQKRGWEQFTDAIIRLVNQQREPVVFLLWGSYAQRKAEFVDR
SRHLVLKAAHPSPLSAHNGFLGCRHFSQANAFLEEKGRGAIDWGLPETVAA
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacgatcaagctggacgagagctggcgcgcgccgctgctgcgggaattcgag
agcccctatatgcaggggctgaagcgcttccttcaggaggagaaggcgcagggcaagcgc
atcttccccaagggcagcgaatatttccgggcgctggacctgacgccgctggacagggtg
aaggtggtggtgctggggcaggacccctatcatggcgaggggcaggcgcatggcctgtgc
ttttcggtgaagccgggggtgcggacgccgccgtcgctggtcaatatctacaaggaattg
cagagcgacctggggctgccgccgccgcgccacggtttcctggagcattgggcgcggcag
ggcgtgctgctgctgaacagcgtgctgacggtggagatgggcaaggcggcgtcgcaccag
aagcgcggctgggaacagtttaccgatgcgatcatccggctggtcaaccagcagcgcgag
ccggtggtgttcctgctgtggggcagctatgcccagcgcaaggcggagtttgtcgaccgg
agccggcatctggtgctgaaggcggcgcacccctcccccctttcggcgcataacgggttc
ctggggtgccggcatttttcgcaggccaacgcctttctggaggagaaggggcgcggggcg
atcgactgggggttgccggagacggtggcggcatga
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